CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011847.1-P	Field mustard	plastid	98.94	95.88
CDY42639	Canola	plastid	98.3	95.86
AT4G39620.1	Thale cress	plastid	90.02	75.31
VIT_07s0031g01360.t01	Wine grape	plastid	68.15	65.64
PGSC0003DMT400033331	Potato	plastid	64.12	63.31
Solyc04g054270.2.1	Tomato	plastid	64.12	63.18
KRH59429	Soybean	plastid	67.09	62.82
KRH43291	Soybean	plastid	66.45	59.51
GSMUA_Achr5P22880_001	Banana	plastid	62.84	58.04
Zm00001d052240_P001	Maize	plastid	61.15	57.72
KXG30749	Sorghum	plastid	59.87	56.63
TraesCS6D01G282900.1	Wheat	plastid	59.66	52.04
TraesCS6A01G303300.1	Wheat	plastid	59.66	52.04
Os02t0750400-01	Rice	cytosol	23.35	51.89
TraesCS6B01G332800.1	Wheat	plastid	59.45	49.47
HORVU6Hr1G075250.5	Barley	plastid	52.02	49.0
CDY24692	Canola	plastid	22.93	22.5
CDX86283	Canola	plastid	23.99	22.24
CDX85360	Canola	plastid	23.57	21.98
CDY05264	Canola	plastid	22.72	21.84
CDX78150	Canola	plastid	21.44	20.82
CDX73576	Canola	plastid	21.02	19.84
CDY64953	Canola	cytosol	11.04	17.87
CDX74617	Canola	mitochondrion	11.68	15.67
CDX71198	Canola	cytosol	16.99	14.13
CDY31666	Canola	cytosol	18.68	14.13
CDX84260	Canola	cytosol, nucleus, plastid	19.11	14.0
CDY31603	Canola	plastid	18.68	13.27
CDX71562	Canola	mitochondrion, plastid	19.11	12.88
CDY06027	Canola	plastid	14.01	12.43
CDX71917	Canola	plastid	14.01	12.11
CDY56509	Canola	plastid	20.81	11.98
CDY29249	Canola	plastid	20.59	11.87
CDY19091	Canola	cytosol	18.05	11.66
CDX73117	Canola	plastid	20.17	11.01
CDY32056	Canola	plastid	18.9	11.0
CDY15384	Canola	cytosol	9.77	10.8
CDY45398	Canola	plastid	19.75	10.76
CDX79920	Canola	cytosol, plastid	18.47	10.65
CDX98345	Canola	cytosol	7.01	10.61
CDY23832	Canola	plastid	18.26	10.51
CDY10802	Canola	plastid	17.62	9.78
CDY56616	Canola	plastid	15.71	9.38
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY41990	EnsemblPlantsGene:GSBRNA2T00073989001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY41990	ProteinID:CDY41990.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EF2E31	UniProt:A0A078HTX8	MapMan:35.1	:	:

Description

BnaA01g05620DBnaA01g05620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTX8]

Coordinates

chrLK032511:+:209175..211388

Molecular Weight (calculated)

54348.3 Da

IEP (calculated)

9.450

GRAVY (calculated)

-0.354

Length

471 amino acids

Sequence
(BLAST)

001: MAVDYLLTSP STLRFSDFIS SFSPNTNHKC LRFSPKPSSA RITCGAVSSK RKLAEREIAE RENRVLVRNL MSRISDREPL VKTLDKYVKV VRCEHCFLLF
101: EELGKSDKWL QCLEVFRWMQ KQRWYIADNG VYSKLISVMG KKGQTRMAMW LFSEMKNSGC RPDASVYNAL ITAHLHTRDK AKALEKVLGY FDKMKGMERC
201: QPNVVTYNIL LRAFAQSGKV DQVNALFKDL DMSAVSPDVY TFNGVMDAYG KNGMIKEMES VLTRMRSNEC KPDIITFNLL IDSYGKKQEF EKMEQTFKSL
301: MRSKEKPTLP TFNSMIINYG KARLRDKAEW VFEKMNDMNY APSFITYECM IMMYGYCGCV SRAREVFEEV VESERVLKAS TLNAMLEVYC LNGLHMEADK
401: LFHNASGFRV HPDASTYKLL YKAYTKADMK ENVQMLMKKM EKDGIVPNKR FFLEALEAFG SRLPGSDSAM R

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.