Factsheet for Solyc04g054270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033331	Potato	plastid	96.65	96.86
VIT_07s0031g01360.t01	Wine grape	plastid	69.67	68.1
CDY41990	Canola	plastid	63.18	64.12
KRH59429	Soybean	plastid	66.11	62.82
CDY42639	Canola	plastid	63.39	62.73
Bra011847.1-P	Field mustard	plastid	62.55	61.52
GSMUA_Achr5P22880_001	Banana	plastid	64.02	60.0
KRH43291	Soybean	plastid	65.48	59.51
KXG30749	Sorghum	plastid	61.51	59.04
Zm00001d052240_P001	Maize	plastid	60.67	58.12
Os02t0750400-01	Rice	cytosol	24.48	55.19
TraesCS6D01G282900.1	Wheat	plastid	60.88	53.89
TraesCS6A01G303300.1	Wheat	plastid	60.88	53.89
AT4G39620.1	Thale cress	plastid	62.13	52.75
TraesCS6B01G332800.1	Wheat	plastid	61.09	51.59
HORVU6Hr1G075250.5	Barley	plastid	53.56	51.2
Solyc01g006500.2.1	Tomato	plastid	22.38	21.93
Solyc08g045780.2.1	Tomato	cytosol	20.5	21.3
Solyc12g098990.1.1	Tomato	plastid	20.92	20.2
Solyc01g057200.2.1	Tomato	plastid	19.67	20.0
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	20.08	15.41
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	11.72	14.7
Solyc08g045850.2.1	Tomato	nucleus	19.87	13.59
Solyc06g009520.2.1	Tomato	nucleus, plastid	23.22	13.2
Solyc07g043600.2.1	Tomato	nucleus	15.48	12.76
Solyc01g107320.2.1	Tomato	plastid	20.5	11.97
Solyc07g017760.1.1	Tomato	plastid	20.29	11.52
Solyc03g113630.2.1	Tomato	nucleus	19.67	10.93
Solyc04g015950.1.1	Tomato	plastid	17.36	9.76

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4BSI2	PFAM:PF01535
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	EnsemblPlantsGene:Solyc04g054270.2	EnsemblPlants:Solyc04g054270.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002765620
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G39620) UniProtKB/Swiss-Prot;Acc:Q9SV96]

Coordinates

chr4:+:52263258..52265901

Molecular Weight (calculated)

54585.4 Da

IEP (calculated)

9.715

GRAVY (calculated)

-0.368

Length

478 amino acids

Sequence
(BLAST)

001: MTTLQFSSSS SVQLPSSTTT TTPWLNLQKK RPLYSIVRCV STRPGGRKSG YGSSSSEAQE LVTLVMRNFS DKKPLVSTLD KYVKLVRTEH CFLLFEQLGK
101: TDNWLQCLEV FRWMQKQRWY IADNGVYSKL ISVMGKKGQI RMAMWLFSEM RNSGCRPDTS VYNAVISAHL HSRDKSKALT KAMGYFEKMK EMERCSPSIV
201: TYNILLRAFA QAKNVEQVDA LLKDLDESIV TPDIFTFNGL MDAYGKNGMI NEMEHVLSRM KSNKLKPDII TFNILIDSYG KKQDFQKMEQ VFKSLLQSKE
301: KPTIPTFNSM ITNYGKARLR EKSELVLEKM IDLGYKPSYI TYECLIVMYG HCDCVSKARE LFDRVMESEK EKKASTLNSM LDAYCMNGLP MEAHLLFESI
401: HSAKAFPIDS STYKLLYKAY TKADMKELVQ KLLTYMDEDG IIPNKKFFLD ALGAFGSAPT NRRAVGDNKG LSKHKGHK

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.