Factsheet for TraesCS6D01G282900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G303300.1	Wheat	plastid	97.41	97.41
TraesCS6B01G332800.1	Wheat	plastid	95.0	90.64
HORVU6Hr1G075250.5	Barley	plastid	79.07	85.4
KXG30749	Sorghum	plastid	74.63	80.92
Os02t0750400-01	Rice	cytosol	31.67	80.66
Zm00001d052240_P001	Maize	plastid	73.89	79.96
GSMUA_Achr5P22880_001	Banana	plastid	59.26	62.75
Solyc04g054270.2.1	Tomato	plastid	53.89	60.88
PGSC0003DMT400033331	Potato	plastid	53.7	60.8
VIT_07s0031g01360.t01	Wine grape	plastid	54.44	60.12
CDY41990	Canola	plastid	52.04	59.66
CDY42639	Canola	plastid	52.22	58.39
Bra011847.1-P	Field mustard	plastid	51.67	57.41
KRH59429	Soybean	plastid	53.15	57.06
KRH43291	Soybean	plastid	52.96	54.37
AT4G39620.1	Thale cress	plastid	50.0	47.96
TraesCS4D01G353200.2	Wheat	cytosol	18.7	20.82
TraesCS4D01G132900.3	Wheat	plastid	20.19	20.15
TraesCS7D01G400900.3	Wheat	cytosol	15.19	15.8
TraesCS3D01G529200.1	Wheat	plastid	15.37	13.58
TraesCS7D01G482800.1	Wheat	plastid	20.19	13.39
TraesCS2D01G193100.1	Wheat	plastid	18.7	12.74
TraesCS5D01G097800.1	Wheat	plastid	18.33	11.57
TraesCS5D01G500300.1	Wheat	plastid	18.15	11.26
TraesCS2D01G244500.3	Wheat	plastid	16.85	10.86
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	10.74	9.78

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF490	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS6D01G282900	EnsemblPlants:TraesCS6D01G282900.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:389985194..389987048

Molecular Weight (calculated)

60287.6 Da

IEP (calculated)

9.984

GRAVY (calculated)

-0.411

Length

540 amino acids

Sequence
(BLAST)

001: MLAYPSTSTP PWPQRHPAAA SPRRVAVAAS PAGAPARGKR RRAGAGEGEA DPAAEAAELV RFFLRKTDGG KDRLVSVLDR HVKVVRTEHC FLLFEELGRR
101: DGWVQCLEIF RWMQKQRWYV ADNGIYSKLI SVMGRKGQIR MAMWLFSQMR NSGCKPDTSV YNSLIGAHLH SRDKSKALVK ALGYFDKMKG MERCQPNIVT
201: YNILLRACAR ASDTKQVDIL FKDLDESIVS PDIYTYNGVI DGYGKNGMIA EMESVLVRMK SKQCRPDVIT FNILIDSYGR KQTFDKMEQV FKSLLRSKER
301: PTHPTFNSMI TNYGKARLRE KAESVLEKMG ELGFKPNYVT QECLINMYAY CDCVSKAQQI FDELVSSQST VPLSSLNAML DAYCMNRLPM EADRLLDSAI
401: EKGVVPSAST YKLLYKAYTR ANDKMLVQKL LQRMNKQGIV PNKKFFLDAL EAFGTSANKP RRVQTSNSAR ESSRDSASNL EMASPSKPVL STLEAVGASK
501: KTPRILPNSN SASKPDTGSE SSSEIATSSK PELSFSQVAS

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.