Factsheet for Zm00001d052240_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30749	Sorghum	plastid	91.38	91.57
Os02t0750400-01	Rice	cytosol	32.67	76.89
TraesCS6D01G282900.1	Wheat	plastid	79.96	73.89
TraesCS6A01G303300.1	Wheat	plastid	79.76	73.7
TraesCS6B01G332800.1	Wheat	plastid	77.56	68.37
HORVU6Hr1G075250.5	Barley	plastid	66.53	66.4
GSMUA_Achr5P22880_001	Banana	plastid	64.13	62.75
CDY41990	Canola	plastid	57.72	61.15
Solyc04g054270.2.1	Tomato	plastid	58.12	60.67
PGSC0003DMT400033331	Potato	plastid	57.92	60.59
VIT_07s0031g01360.t01	Wine grape	plastid	58.92	60.12
CDY42639	Canola	plastid	57.72	59.63
Bra011847.1-P	Field mustard	plastid	57.31	58.85
KRH59429	Soybean	plastid	57.92	57.46
KRH43291	Soybean	plastid	57.31	54.37
AT4G39620.1	Thale cress	plastid	55.91	49.56
Zm00001d037476_P001	Maize	plastid	20.44	20.73
Zm00001d027349_P001	Maize	plastid	19.24	19.79
Zm00001d018693_P001	Maize	plastid	21.44	18.74
Zm00001d014751_P003	Maize	plastid	15.23	14.29
Zm00001d015377_P003	Maize	plastid	16.83	14.07
Zm00001d024248_P001	Maize	plastid	16.63	13.83
Zm00001d036698_P001	Maize	plastid	21.64	13.74
Zm00001d021716_P001	Maize	plastid	17.43	13.02
Zm00001d022003_P001	Maize	plastid	20.04	12.58
Zm00001d021871_P002	Maize	plastid	18.44	11.43
Zm00001d022599_P002	Maize	plastid	19.24	10.74
Zm00001d030624_P001	Maize	plastid	17.84	10.23

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100126361	MapMan:35.1	UniProt:A7LN87	ProteinID:AQK56524.1	EMBL:BT062576
EMBL:EU037901	GO:GO:0000003	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003727	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0006412	GO:GO:0006417	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0019538	GO:GO:0031425
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF490	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00015A2042	EnsemblPlantsGene:Zm00001d052240	EnsemblPlants:Zm00001d052240_P001	EnsemblPlants:Zm00001d052240_T001	SEG:seg	:

Description

pentatricopeptide repeat 5 pentatricopeptide repeat 5

Coordinates

chr4:-:184369041..184371794

Molecular Weight (calculated)

55939.6 Da

IEP (calculated)

9.598

GRAVY (calculated)

-0.375

Length

499 amino acids

Sequence
(BLAST)

001: MLACPSTSSP WPQRQPPSPC PGGGGGATRH VALAARSKRR GAGPAAAEGV DEAAAEAAEL VRSLLRRTAG GKERLVPVLD RHVRVVRTEH CFLLFEELGR
101: RDAWLQCLDV FRWMQKQRWY VADNGIYSKL ISVMGRKGQI RMAMWLFSQM RNSGCKPDTS VYNSLIGAHL HSRDKTKALA KALGYFEKMK CIERCQPTIV
201: TYNILLRAFA QAGDTKQVDM LFKDLDESVV SPDVYTYNGV LDAYGKNGMI KEMESVLVRM KSTQCRPDVI TFNILIDSYG RKQTFDKMEQ VFKSLLRSKE
301: RPTHPTFNSM ITNYGRARLR EKAESVVEKM EELGFKPNYV TQECLIIMYA HCDCVSKARQ VFDELVTSQT KVHLSSLNSM LEAYCMNGLH TEADRLLDTA
401: LQQCVVPNGS TYKLLYKAYT KANDKLLVQK LLKRMNKQGI VPNKKFFLDA LEAFGTSDRK PRTSPGINSA SKPSTDSAGD SETATSDKPE VSVWHVAAT

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.