Factsheet for Zm00001d015377_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84443	Sorghum	cytosol	90.28	89.09
Os02t0170000-02	Rice	cytosol	65.66	83.58
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	74.04	68.53
GSMUA_Achr7P03530_001	Banana	cytosol	61.47	62.31
VIT_01s0011g01970.t01	Wine grape	cytosol	58.63	60.14
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	57.45	57.84
PGSC0003DMT400027006	Potato	cytosol, plastid	55.61	57.64
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	58.63	55.82
TraesCS6A01G163600.2	Wheat	nucleus	58.63	55.47
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	57.45	54.88
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	55.44	54.0
CDY31666	Canola	cytosol	55.61	53.29
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	55.28	52.97
CDX84260	Canola	cytosol, nucleus, plastid	56.28	52.26
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	54.61	42.89
Zm00001d014751_P003	Maize	plastid	17.42	19.55
Zm00001d027349_P001	Maize	plastid	15.24	18.76
Zm00001d037476_P001	Maize	plastid	15.24	18.5
Zm00001d024248_P001	Maize	plastid	17.59	17.5
Zm00001d021716_P001	Maize	plastid	18.93	16.92
Zm00001d052240_P001	Maize	plastid	14.07	16.83
Zm00001d018693_P001	Maize	plastid	15.75	16.46
Zm00001d022003_P001	Maize	plastid	21.61	16.23
Zm00001d036698_P001	Maize	plastid	20.1	15.27
Zm00001d022599_P002	Maize	plastid	18.93	12.64
Zm00001d021871_P002	Maize	plastid	16.42	12.17
Zm00001d030624_P001	Maize	plastid	17.25	11.84

Protein Annotations

MapMan:1.1.8.1.6.1	Gene3D:1.25.40.10	EntrezGene:100277891	ProteinID:AQK68743.1	ProteinID:AQK68744.1	EMBL:BT063481
UniProt:C0P5B2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF421
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001948FF5	EnsemblPlantsGene:Zm00001d015377	EnsemblPlants:Zm00001d015377_P003
EnsemblPlants:Zm00001d015377_T003	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr5:+:87067786..87070960

Molecular Weight (calculated)

66725.9 Da

IEP (calculated)

8.184

GRAVY (calculated)

-0.365

Length

597 amino acids

Sequence
(BLAST)

001: MLSVEAHTYY YYPTARPRRK LCACRNVLQE TAPRDAEADP CRHGERKSRR RGDGAYYIDK DGGGVARTFD RKKISRKRGG AIKGRGWKYG SGFVDGVFPV
101: LSPMAQDVLE LVQTRGTDAA SVWESLDKIP QAHDLWDDIV NVAVQLRLNR QWEPIITVCE WVLRRSSFRP DIICYNLLID AYGQKRQLSE AEAAYMALLE
201: ARCVPTEDTY ALLLRAYCGS GQLHRAEGVI SEMQRNGIPP TATVYNAYLD GLLKARCSEK AVEVYQRMKK ERCRTNTETY TLMINVYGKA NQPMSSLRVF
301: REMKSVGCKP NICTYTALVN AFAREGLCEK AEEVFEEMQQ AGHEPDVYAY NALMEAYSRA GLPQGASEIF SLMEHMGCEP DRASYNILVD AFGRAGLHQE
401: AEAAFQELKQ QGMRPTMKSH MLLLSAHARS GNVARCEEVM AQLHKSGLRP DTFALNAMLN AYGRAGRLDD MERLFAAMER GDGAIAGAPD TSTYNVMVNA
501: YGRAGYLDRM EAAFRSLAAR GLAADVVTWT SRIGAYARKK EYGQCLRVFE EMVDAGCYPD AGTAKVLLAA CSDERQVEQV KAIVRSMHKD AKTLFAL

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.