Factsheet for Zm00001d024248_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13486	Sorghum	plastid	92.33	92.03
Os08t0191900-01	Rice	plastid	83.17	81.94
TraesCS3A01G523700.1	Wheat	plastid	79.33	78.29
TraesCSU01G054500.1	Wheat	cytosol, plastid	79.33	77.91
TraesCS3D01G529200.1	Wheat	plastid	79.0	77.58
HORVU3Hr1G114340.4	Barley	mitochondrion	78.83	74.61
VIT_12s0028g01140.t01	Wine grape	cytosol	58.17	63.69
PGSC0003DMT400041148	Potato	plastid	59.67	62.59
CDY06027	Canola	plastid	55.33	62.52
Solyc07g043600.2.1	Tomato	nucleus	60.0	62.07
CDX71917	Canola	plastid	55.83	61.47
KRH36131	Soybean	plastid	56.5	61.3
KRG90623	Soybean	nucleus	56.33	60.14
AT3G59040.2	Thale cress	endoplasmic reticulum	55.83	56.78
CDX98345	Canola	cytosol	26.17	50.48
GSMUA_Achr8P07220_001	Banana	cytosol	70.0	38.6
Zm00001d027349_P001	Maize	plastid	15.17	18.76
Zm00001d037476_P001	Maize	plastid	14.83	18.09
Zm00001d015377_P003	Maize	plastid	17.5	17.59
Zm00001d052240_P001	Maize	plastid	13.83	16.63
Zm00001d021716_P001	Maize	plastid	17.83	16.02
Zm00001d018693_P001	Maize	plastid	14.5	15.24
Zm00001d014751_P003	Maize	plastid	13.5	15.23
Zm00001d022003_P001	Maize	plastid	17.83	13.46
Zm00001d036698_P001	Maize	plastid	16.5	12.6
Zm00001d021871_P002	Maize	plastid	15.0	11.18
Zm00001d030624_P001	Maize	plastid	15.83	10.92
Zm00001d022599_P002	Maize	plastid	15.0	10.07

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103641124	MapMan:16.12.4.6	ProteinID:AQK40902.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7TKX8	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF722	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002220E98	EnsemblPlantsGene:Zm00001d024248	EnsemblPlants:Zm00001d024248_P001	EnsemblPlants:Zm00001d024248_T001
SEG:seg	:	:	:	:	:

Description

pentatricopeptide repeat*-59040

Coordinates

chr10:+:59441463..59446450

Molecular Weight (calculated)

69238.7 Da

IEP (calculated)

6.254

GRAVY (calculated)

-0.633

Length

600 amino acids

Sequence
(BLAST)

001: MESAAIGSQS PLSFPSSLCK GKVSSSLSIY NVKIKSNCRL EVVCHGMLAT RKFMQRKKKE EVFKDGADET EQMNWRRMMR EIEQEGSAVP ILKTQRNRKE
101: PLPRDVILGT LIRFKQLKKW NIVSEILEWL RTQHWWDFSE MDFLMLVTAY GKLGDFSRAE RVLKYMNKKG YQPSVISQTG LMEAYGRGKQ YRKAEAVFRR
201: MQTSGPQPSP VTYQIILKSL VEGDKYKEAE AIFEDLLNEK RTSFKPDQKM FHMMIYMYKK AGDYAQARKL FAQMSERGIP LSTVTFNSLM SFETEYKEVS
301: NIYDQMQRAG LKPDVVSYSL LIKAYGKARR EEEALAVFEE MLDAGVRPTR KSYNILLDAF AISGLVEEAN TVFRAMRRHR VEPDLCSYTT MVLAYVNASE
401: MNGAEKFFRR IKEDGLKPNV VVYGTLMKGY SKLNNLEKVM RVYERMRIQG VEPNQTIYTT IMDAQGRNSD FGNAVIWFKE MEARGYPPDQ KAKNILLSLA
501: KTPEEEQEAN DLVGNGPVQL EVKPDGEVDG DDGHEVIQTD AENHRLLDDT RARNHVNGRI RAGDDYNFDE EDDDDDYEEE EDEEFDLVSF KDKRKLNFAS

Best Arabidopsis Sequence Match ( AT3G59040.2 )
(BLAST)

001: MFFSFRLLKV LVFHLQIRPC VLLCVSQRKL QNNIINVGVK IQNRFRVVCM GMLAPRKFLQ KRRKMEVFKD AADETDQKRW RGLMLEIEST GSAVPVLRQY
101: KTDGDQGLPR DLVLGTLVRF KQLKKWNLVS EILEWLRYQN WWNFSEIDFL MLITAYGKLG NFNGAERVLS VLSKMGSTPN VISYTALMES YGRGGKCNNA
201: EAIFRRMQSS GPEPSAITYQ IILKTFVEGD KFKEAEEVFE TLLDEKKSPL KPDQKMYHMM IYMYKKAGNY EKARKVFSSM VGKGVPQSTV TYNSLMSFET
301: SYKEVSKIYD QMQRSDIQPD VVSYALLIKA YGRARREEEA LSVFEEMLDA GVRPTHKAYN ILLDAFAISG MVEQAKTVFK SMRRDRIFPD LWSYTTMLSA
401: YVNASDMEGA EKFFKRIKVD GFEPNIVTYG TLIKGYAKAN DVEKMMEVYE KMRLSGIKAN QTILTTIMDA SGRCKNFGSA LGWYKEMESC GVPPDQKAKN
501: VLLSLASTQD ELEEAKELTG IRNETATIIA RVYGSDDDEE GVEDISSESS DDEDEGDDDD DDARETVLYD KPQEGSLGYG SLQTEELVGL

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.