CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57931	Soybean	cytosol	18.44	95.33
KRG90623	Soybean	nucleus	95.12	93.59
VIT_12s0028g01140.t01	Wine grape	cytosol	67.09	67.7
CDY06027	Canola	plastid	64.2	66.86
CDX71917	Canola	plastid	64.92	65.87
PGSC0003DMT400041148	Potato	plastid	67.09	64.86
Solyc07g043600.2.1	Tomato	nucleus	66.37	63.28
AT3G59040.2	Thale cress	endoplasmic reticulum	64.92	60.85
EES13486	Sorghum	plastid	61.84	56.81
Zm00001d024248_P001	Maize	plastid	61.3	56.5
Os08t0191900-01	Rice	plastid	61.3	55.66
TraesCS3A01G523700.1	Wheat	plastid	61.12	55.59
TraesCS3D01G529200.1	Wheat	plastid	60.94	55.16
TraesCSU01G054500.1	Wheat	cytosol, plastid	60.76	54.99
HORVU3Hr1G114340.4	Barley	mitochondrion	60.94	53.15
CDX98345	Canola	cytosol	29.29	52.09
GSMUA_Achr8P07220_001	Banana	cytosol	63.83	32.44
KRH14115	Soybean	plastid	15.01	17.26
KRH02371	Soybean	plastid	14.65	16.6
KRH02451	Soybean	plastid	14.65	16.6
KRH37687	Soybean	plastid	14.47	16.49
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	18.63	16.48
KRH60945	Soybean	plastid	18.81	15.25
KRH46714	Soybean	plastid	14.1	15.15
KRH51622	Soybean	cytosol, plastid	18.99	15.09
KRH59429	Soybean	plastid	13.56	14.91
KRH27783	Soybean	cytosol, plastid	13.92	14.75
KRH77730	Soybean	plastid	13.56	14.34
KRH43291	Soybean	plastid	13.38	14.07
KRH27571	Soybean	plastid	13.2	13.52
KRG91073	Soybean	plastid	18.26	12.72
KRH12254	Soybean	plastid	18.81	12.55
KRH66918	Soybean	cytosol	18.08	11.95
KRH37281	Soybean	plastid	17.9	11.93
KRH01436	Soybean	plastid	18.08	11.43
KRH56998	Soybean	nucleus	17.54	11.31
KRH03384	Soybean	nucleus	17.54	11.29
KRH45156	Soybean	plastid	17.72	11.16
KRG95241	Soybean	plastid	13.74	11.16

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100796513	MapMan:16.12.4.6	EMBL:ACUP02006721	EnsemblPlantsGene:GLYMA_10G285200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1LF84	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH36131	ProteinID:KRH36131	ProteinID:KRH36131.1
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF722
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233D51C	:

Description

hypothetical protein

Coordinates

chr10:-:50541276..50545456

Molecular Weight (calculated)

63836.6 Da

IEP (calculated)

6.653

GRAVY (calculated)

-0.504

Length

553 amino acids

Sequence
(BLAST)

001: MCSLISKSHC HLRQLPLPHT RTGNGIASVR MSGRMEVVCR GMLKPRKFMQ RRRKFEVFKD AADEADQKNW RRIMTEIEES GSAVSVLSSE KINNQNIPKD
101: LLVGTLIRFK QLKKWHLVVE ILDWLRTQNW WDFGKMDFFM LITAYGKLGD FNGAEKVLGL MNKNGYVPNV VSQTALMEAY GKGGRYNNAE AIFRRMQKWG
201: PEPSAFTYQI ILKTFVQGNK YREAEELFDN LLNDENSPLK PDQKMFNMMI YMYKKAGSYE KARKTFALMA ERGIQQTTVT YNSLMSFETD YKEVSNIYDQ
301: MQRADLRPDV VSYALLVSAY GKARREEEAL AVFEEMLDAG VRPTRKAYNI LLDAFSISGM VEQAQTVFKS MRRDRYFPDL CSYTTMLSAY VNADDMEGAE
401: KFFKRLIQDD FEPNVVTYGT LIKGYAKIND LEMVMKKYEE MLVRGIKANQ TILTTIMDAY GKSGDFDSAV HWFKEMESNG IPPDQKAKNV LLSLPKTDEE
501: REEANELVGH FSENNSLSKV NGIVKLVDED EENKYEYFDA QLERAYEHST ELS

Best Arabidopsis Sequence Match ( AT3G59040.1 )
(BLAST)

001: MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.