CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03384	Soybean	nucleus	94.52	94.41
VIT_17s0000g07500.t01	Wine grape	plastid	75.17	74.22
PGSC0003DMT400063174	Potato	plastid	69.93	69.77
AT1G74850.1	Thale cress	plastid	69.93	69.61
Solyc03g113630.2.1	Tomato	nucleus	69.46	69.3
CDY45398	Canola	plastid	69.7	69.21
CDX73117	Canola	plastid	69.46	69.06
Bra015889.1-P	Field mustard	plastid	69.46	68.98
GSMUA_Achr1P18290_001	Banana	cytosol	50.23	64.91
HORVU5Hr1G114630.1	Barley	mitochondrion	48.83	50.3
Os03t0824100-01	Rice	plastid	50.0	49.42
TraesCS5A01G486300.1	Wheat	plastid	49.65	49.02
TraesCS5D01G500300.1	Wheat	plastid	49.53	48.85
TraesCS5B01G500100.1	Wheat	plastid	49.3	48.12
OQU90703	Sorghum	plastid	49.65	47.49
Zm00001d022599_P002	Maize	plastid	49.18	47.2
KRH46714	Soybean	plastid	12.47	20.78
KRH12254	Soybean	plastid	20.05	20.75
KRH57931	Soybean	cytosol	2.56	20.56
KRH66918	Soybean	cytosol	19.93	20.43
KRG91073	Soybean	plastid	18.88	20.4
KRH01436	Soybean	plastid	20.63	20.23
KRH45156	Soybean	plastid	20.63	20.16
KRH37281	Soybean	plastid	19.35	20.0
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	14.57	20.0
KRH02451	Soybean	plastid	11.31	19.88
KRH02371	Soybean	plastid	11.19	19.67
KRH60945	Soybean	plastid	15.5	19.5
KRH27571	Soybean	plastid	12.12	19.26
KRH51622	Soybean	cytosol, plastid	15.5	19.11
KRH14115	Soybean	plastid	10.61	18.92
KRH37687	Soybean	plastid	10.26	18.14
KRH59429	Soybean	plastid	10.61	18.09
KRG95241	Soybean	plastid	14.1	17.77
KRH36131	Soybean	plastid	11.31	17.54
KRH43291	Soybean	plastid	10.49	17.11
KRG90623	Soybean	nucleus	11.07	16.9
KRH27783	Soybean	cytosol, plastid	9.56	15.71
KRH77730	Soybean	plastid	9.21	15.11

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100801366	MapMan:15.6.1.2.2.2	UniProt:A0A0R0JQC7	EMBL:ACUP02002805	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G032300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlants:KRH56998	ProteinID:KRH56998	ProteinID:KRH56998.1	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat
SMART:SM00463	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0003DECDE2	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:2819048..2826148

Molecular Weight (calculated)

95650.0 Da

IEP (calculated)

5.614

GRAVY (calculated)

-0.164

Length

858 amino acids

Sequence
(BLAST)

001: MPLKMTLTLS PFSPTLLTPA TTLRQLLFTN FTPSPKRRLL LQARAAKPNV LIPINPSVTV EKGKYSYDVE TLINRLTALP PRGSIARCLD PFKNKLSLND
101: FALVFKEFAQ RGDWQRSLRL FKYMQRQIWC KPNEHIHTIM ITLLGREGLL DKCREVFDEM PSNGVVRTVY SYTAIINAYG RNGQFHASLE LLNGMKQERV
201: SPSILTYNTV INACARGGLD WEGLLGLFAE MRHEGIQPDV ITYNTLLGAC AHRGLGDEAE MVFRTMNESG IVPDINTYSY LVQTFGKLNR LEKVSELLRE
301: MECGGNLPDI TSYNVLLEAY AELGSIKEAM GVFRQMQAAG CVANAATYSV LLNLYGKHGR YDDVRDLFLE MKVSNTDPDA GTYNILIQVF GEGGYFKEVV
401: TLFHDMAEEN VEPNMQTYEG LIFACGKGGL YEDAKKILLH MNEKGVVPSS KAYTGVIEAF GQAALYEEAL VMFNTMNEVG SNPTVETYNS LIHAFARGGL
501: YKEAEAILSR MNESGLKRDV HSFNGVIEAF RQGGQYEEAV KSYVEMEKAN CEPNELTLEA VLSIYCSAGL VDEGEEQFQE IKASGILPSV MCYCMMLALY
601: AKNDRLNDAY NLIDAMITMR VSDIHQVIGQ MIKGDFDDES NWQIVEYVFD KLNSEGCGLG MRFYNALLEA LWCMFQRERA ARVLNEASKR GLFPELFRKS
701: KLVWSVDVHR MSEGGALTAL SVWLNNVHEM SMTGDDLPEV ATVVVVSRGH MEKTTDAQDF PIAKAAISFL QDNVPSSFAF PGWNKGRIVC QQSQLRRILS
801: GTESSSSRKK MDKLISLSNT PLTTAGAITS KSDAQSGKAN GVDSRTDSTR TELLTSAI

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.