Factsheet for Os03t0824100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G114630.1	Barley	mitochondrion	82.03	85.47
TraesCS5A01G486300.1	Wheat	plastid	84.79	84.7
TraesCS5B01G500100.1	Wheat	plastid	85.48	84.41
TraesCS5D01G500300.1	Wheat	plastid	84.56	84.37
Zm00001d022599_P002	Maize	plastid	86.52	84.0
OQU90703	Sorghum	plastid	86.75	83.95
GSMUA_Achr1P18290_001	Banana	cytosol	46.43	60.69
CDX73117	Canola	plastid	51.04	51.33
Bra015889.1-P	Field mustard	plastid	50.81	51.04
CDY45398	Canola	plastid	50.69	50.93
AT1G74850.1	Thale cress	plastid	50.35	50.7
KRH56998	Soybean	nucleus	49.42	50.0
KRH03384	Soybean	nucleus	49.31	49.83
PGSC0003DMT400063174	Potato	plastid	49.19	49.65
VIT_17s0000g07500.t01	Wine grape	plastid	49.31	49.25
Solyc03g113630.2.1	Tomato	nucleus	48.62	49.07
Os06t0710800-01	Rice	cytosol	11.98	21.14
Os06t0172000-01	Rice	plastid	12.44	21.14
Os02t0170000-02	Rice	cytosol	11.06	20.47
Os05t0275000-01	Rice	cytosol, plastid	17.86	19.55
Os07t0590600-00	Rice	plastid	17.63	19.52
Os07t0548300-01	Rice	plastid	13.94	18.76
Os03t0309800-02	Rice	plastid	10.25	17.76
Os07t0213300-01	Rice	cytosol	13.82	17.73
Os12t0562300-01	Rice	cytosol	5.99	16.99
Os03t0115300-00	Rice	plastid	9.45	16.73
Os02t0750400-01	Rice	cytosol	4.03	16.51
Os08t0191900-01	Rice	plastid	10.02	14.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:15.6.1.2.2.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008274	GO:GO:0009058	GO:GO:0009295	GO:GO:0009451	GO:GO:0009507
GO:GO:0009508	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0033566	GO:GO:0042793
GO:GO:0045893	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os03g0824100
EnsemblPlants:Os03t0824100-01	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF48452	InterPro:Smr_dom
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001C7F061	SEG:seg	:	:

Description

plastid transcriptionally active chromosome protein 2Pentatricopeptide repeat protein, Regulation of chloroplast development (Os03t0824100-01)

Coordinates

chr3:-:34610054..34614454

Molecular Weight (calculated)

95983.5 Da

IEP (calculated)

5.194

GRAVY (calculated)

-0.138

Length

868 amino acids

Sequence
(BLAST)

001: MVDAPMALVS TTATVASPSY HYCDLLFPPA RRWCCRARRR GGGGGRVAVV AARAPREAAA AAVVVENGGH SYEVESLIDR LSNLPPRGSI ARCLETARHR
101: LTLQDFAAVY REFSRRGDWQ RSLRLFKYMQ RQSWCRPDEH IHAIVIGVLG RQGPALLDKC LEVFHDLPSE SRTALSYTSL IAAYARNALH EEARELLDQM
201: KASGVAPTAA TYNTVLAACA RATDPPVPFD MLLGLFAEMR HDPSPSVRPD LTTYNTLLAA AAVRALSDQS EMLLRTMLEA GVLPDTASYR HIVDAFAGAG
301: NLSRVAELFA EMSATGHTPD PSAYLGLMEA HTLVGATAEA VAVLRQMQAD GCPPTAATYR VLLDLYGRQG RFDGVRELFR EMRTTVPPDT ATYNVLFRVF
401: GDGGFFKEVV ELFQDMLHSE VEPDIDTCEN VMVACGRGGL HEDAREVLDY ITTEGMVPTA KAYTGLVEAL GHAAMYEEAY VAFNMMTEIG SLPTIETYNA
501: LANAFAKGGL FQEAEAIFSR MTNNAAIQKD KDSFDALIEA YCQGAQLDDA VKAYMEMRKS RFNPDERSLE GVLNAYCIAG VIDESKEQFE ELQSMVTVPS
601: IIAYCMMLSL YARNDRWTDA YDLLEEMKTN RASSTHQVIA SMIKGEYDDD SNWQMVEYVL DNSNLEGCDY SLRFFNALLD VLWWFGQKGR AARVLDQALK
701: YGLFPELFRD TKLVWSADVH RMSVGGSLVA VSVWLNKLYD RLKGDEDLPQ LASVVVLRGQ MEKSTVTRGL PIAKVVYSFL NDTLSSSFHY PKWNKGRIIC
801: LKSQLKKLQA AIDSSNGAAI SGFVPMTNSH LPSPGSKLYT RESQADNGSA HLTDETLVEE KESELLAL

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.