Factsheet for Os03t0115300-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40345	Sorghum	plastid	76.94	77.57
HORVU4Hr1G086600.3	Barley	plastid	76.12	75.2
Zm00001d027349_P001	Maize	plastid	74.29	75.05
TraesCS4D01G353200.2	Wheat	cytosol	74.29	75.05
TraesCS4B01G359900.1	Wheat	plastid	75.71	73.76
OQU86802	Sorghum	cytosol	45.31	71.84
TraesCS5A01G528400.1	Wheat	plastid	75.92	69.4
VIT_13s0064g00400.t01	Wine grape	cytosol	55.92	55.35
KRH14115	Soybean	plastid	52.86	53.85
PGSC0003DMT400008123	Potato	cytosol, plastid	49.8	53.16
Solyc08g045780.2.1	Tomato	cytosol	49.59	52.83
CDX78150	Canola	plastid	50.2	50.72
AT3G53170.2	Thale cress	plastid	51.02	50.1
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	50.82	49.9
CDX73576	Canola	plastid	50.2	49.3
GSMUA_Achr11P...	Banana	endoplasmic reticulum	61.22	44.25
Os06t0172000-01	Rice	plastid	38.78	37.18
Os03t0309800-02	Rice	plastid	33.06	32.34
Os02t0170000-02	Rice	cytosol	18.16	18.98
Os02t0750400-01	Rice	cytosol	7.55	17.45
Os06t0710800-01	Rice	cytosol	16.53	16.46
Os08t0191900-01	Rice	plastid	19.39	15.6
Os07t0590600-00	Rice	plastid	24.69	15.43
Os07t0548300-01	Rice	plastid	18.98	14.42
Os05t0275000-01	Rice	cytosol, plastid	22.24	13.75
Os07t0213300-01	Rice	cytosol	17.55	12.7
Os03t0824100-01	Rice	plastid	16.73	9.45
Os12t0562300-01	Rice	cytosol	5.31	8.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0P0VS67	ProteinID:BAS81968.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlantsGene:Os03g0115300	EnsemblPlants:Os03t0115300-00	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF425	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00039393E1
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os03t0115300-00)

Coordinates

chr3:-:861320..862938

Molecular Weight (calculated)

54930.9 Da

IEP (calculated)

8.392

GRAVY (calculated)

-0.188

Length

490 amino acids

Sequence
(BLAST)

001: MHSPSPAPAG CPPATSSPPP RASSRATHVV MARGGRRHKP PSSAPEAEQP EALSRILRTE AAVSGVSRKA AAASRQHSTR LWPRAVLEAL DSAVASCRWE
101: PALEIFELLR KQQWYKPRSQ TYARLLMMLG KCQQPGAATA LFKVMLSERL KPTVDVYTAL VGAYGYSGLL DQALATVEQM KGVADCKPDE YTFSVLINCC
201: SKLRRFDRIP AILDEMSYLG LQCNAVIHNA IIDGYGKAGM LEEMENALTS MLEDGDSVPD IYTMNSIIWA YGNHGNRIHE MERWYSEFQL MGVEPDTQTF
301: NIMIKSYGNA KMHDKMMSVL KYMKKHFFSP TVVTFNIIIE SFGRAGNIEK MEYYFRLMKI QGVKPNPITY CSLVNGYSKA GFLDKVPGII RQTENTDVVL
401: DTPFFNCVID AYAKSGDIKI MEEMLQLMKE KKCKPDKVTY TTMIQAYNVH GMDEAANLLK MEVGMVDGKL LVSVFHCYSK LVFHINQCMH

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.