Factsheet for TraesCS5A01G528400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G353200.2	Wheat	cytosol	85.07	94.02
HORVU4Hr1G086600.3	Barley	plastid	83.58	90.32
TraesCS4B01G359900.1	Wheat	plastid	79.66	84.89
KXG40345	Sorghum	plastid	68.84	75.93
Os03t0115300-00	Rice	plastid	69.4	75.92
Zm00001d027349_P001	Maize	plastid	65.86	72.78
OQU86802	Sorghum	cytosol	40.67	70.55
VIT_13s0064g00400.t01	Wine grape	cytosol	50.37	54.55
KRH14115	Soybean	plastid	47.39	52.81
PGSC0003DMT400008123	Potato	cytosol, plastid	43.84	51.2
Solyc08g045780.2.1	Tomato	cytosol	43.47	50.65
CDX78150	Canola	plastid	44.4	49.07
AT3G53170.2	Thale cress	plastid	45.15	48.5
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	44.96	48.3
CDX73576	Canola	plastid	44.4	47.7
GSMUA_Achr11P...	Banana	endoplasmic reticulum	59.33	46.9
TraesCS7A01G133100.1	Wheat	plastid	33.77	35.63
TraesCS4A01G178100.5	Wheat	plastid	30.78	30.5
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	16.98	19.57
TraesCS7A01G407400.1	Wheat	cytosol	15.67	18.38
TraesCS6A01G303300.1	Wheat	plastid	18.1	17.96
TraesCS3A01G523700.1	Wheat	plastid	16.23	14.31
TraesCS6A01G163600.2	Wheat	nucleus	14.74	12.52
TraesCS7A01G495500.1	Wheat	plastid	18.1	11.96
TraesCS5A01G085800.1	Wheat	plastid	17.35	10.84
TraesCS2A01G239500.2	Wheat	plastid	16.79	10.54
TraesCS5A01G486300.1	Wheat	plastid	16.42	10.13
TraesCS5A01G486200.1	Wheat	cytosol	0.37	2.13

Protein Annotations

EnsemblPlants:TraesCS5A01G528400.1	EnsemblPlantsGene:TraesCS5A01G528400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr5A:+:688662668..688664375

Molecular Weight (calculated)

59874.1 Da

IEP (calculated)

7.532

GRAVY (calculated)

-0.043

Length

536 amino acids

Sequence
(BLAST)

001: MGAVSLSCFA ACRSAPYLLR LAPLHGTMHS PARCAATTAT ASPPLRAPFV AMAQRGRRPP SSAPPEAEQP DEALARILRR EAAVSGVPRK AAAGTSQHST
101: RLWPRAVLEA LDSAVASSRW ESALEIFELL RKQRWYEPRT QTYARLLMML GRCRQPGPAT ALFKVMLSEK QLAPTVDVYT ALVGAYGYSG LLDEAMATVG
201: LMKGADTDCK PDEYTFSVLI NCCCKSRRFD LIPTVLDEMS YLGIGCNVVI HNGIIDGYGK AGMLEEMDDA LSNMLQDGDN VPDIYTMNSI IWAYGNRGRV
301: DDMEKWYDEF QLMGVEPDTR TFNIMMKSYG KANMPDKMLS ILKYMKRRFF SPSAATFNII IDCFGRAGNI EKMEYYFRLM KIQGVKPNPI TYCSLVNGYS
401: KAGLLDMVPA IIRQTENTDV VLDTPFFNCV ISAYAKSGDI EIMEEMLVLM KEKKCKPDKV IYTTMIQAYM AHGMDEAAKL LETEMERFNN KLLVSALLYL
501: RELFSLFLIY ACNKLPIIHG IHWLSLFFEP GTSSCG

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.