Factsheet for TraesCS4B01G359900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G086600.3	Barley	plastid	85.29	86.49
TraesCS4D01G353200.2	Wheat	cytosol	81.91	84.95
TraesCS5A01G528400.1	Wheat	plastid	84.89	79.66
Os03t0115300-00	Rice	plastid	73.76	75.71
KXG40345	Sorghum	plastid	71.17	73.66
Zm00001d027349_P001	Maize	plastid	68.19	70.72
OQU86802	Sorghum	cytosol	42.54	69.26
VIT_13s0064g00400.t01	Wine grape	cytosol	51.49	52.32
PGSC0003DMT400008123	Potato	cytosol, plastid	46.12	50.54
KRH14115	Soybean	plastid	48.31	50.52
Solyc08g045780.2.1	Tomato	cytosol	45.53	49.78
CDX78150	Canola	plastid	46.72	48.45
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	47.32	47.7
AT3G53170.2	Thale cress	plastid	47.32	47.7
CDX73576	Canola	plastid	46.52	46.89
GSMUA_Achr11P...	Banana	endoplasmic reticulum	59.64	44.25
TraesCS7B01G033900.1	Wheat	plastid	34.99	34.71
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	32.6	31.12
TraesCS6B01G332800.1	Wheat	plastid	19.68	17.49
TraesCS7B01G307500.2	Wheat	cytosol	15.71	15.22
TraesCS2B01G238300.1	Wheat	plastid	18.89	14.2
TraesCS2B01G212000.1	Wheat	plastid	21.47	13.58
TraesCS7B01G401800.2	Wheat	plastid	18.69	11.53
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	14.12	11.32
TraesCS2B01G269700.1	Wheat	plastid	17.3	10.66
TraesCS5B01G091600.1	Wheat	plastid	16.9	9.91
TraesCS5B01G500100.1	Wheat	plastid	16.5	9.44

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF425	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS4B01G359900
EnsemblPlants:TraesCS4B01G359900.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:650269749..650271356

Molecular Weight (calculated)

56308.5 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.185

Length

503 amino acids

Sequence
(BLAST)

001: MHSPARCPAA TTASSPLRAP FVAMAQRGRR PPSSAAPEAE QPEEALARIL RTEAAVSGVS RKASAGSSQH STRLWPRAVL QALDSAVASS RWESALEVRS
101: LLNPSLSLSR MVQPVRATCS TDAHHVRIAV SQIFELLRKQ RWYEPRTQIY ARLLMMLGRC RQPGPATALF KVMLSEKRLA PTVDVYTALV GAYGYSGLLD
201: EAMATVDRMK GADADCKPDE YTFSVLINCC CKSRRFDLIP TVLDEMSYLG VGCNVVIHNG IIDGYGKAGM LEEMEDALSN MLQDGDNVPD IYTMNSIIWA
301: YGNRGRVDDM ERWYGEFQLM GVEPDTRTFN IMMKSYGKAN MPDKMLSVLK YIKRRFFSPS AATFNIIIEC FGRAGNIEKM EYYFRLMKIK GVKPNPITYC
401: SLVNGYSKSG LLDRVPAIIR QTENTDVALD TPFFNCVISA YAKSGDIKIM EEMLQLMKEK KCKPGKVIYS TMIQAYIAHG MEEDAKLLEK ELERVDEKLL
501: DLF

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.