Factsheet for TraesCS4D01G353200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G528400.1	Wheat	plastid	94.02	85.07
HORVU4Hr1G086600.3	Barley	plastid	84.95	83.06
TraesCS4B01G359900.1	Wheat	plastid	84.95	81.91
KXG40345	Sorghum	plastid	75.05	74.9
Os03t0115300-00	Rice	plastid	75.05	74.29
Zm00001d027349_P001	Maize	plastid	71.75	71.75
OQU86802	Sorghum	cytosol	45.36	71.2
VIT_13s0064g00400.t01	Wine grape	cytosol	53.2	52.12
KRH14115	Soybean	plastid	50.72	51.14
PGSC0003DMT400008123	Potato	cytosol, plastid	47.42	50.11
Solyc08g045780.2.1	Tomato	cytosol	47.22	49.78
CDX78150	Canola	plastid	48.87	48.87
AT3G53170.2	Thale cress	plastid	50.1	48.7
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	49.69	48.3
CDX73576	Canola	plastid	48.87	47.49
GSMUA_Achr11P...	Banana	endoplasmic reticulum	61.86	44.25
TraesCS4D01G132900.3	Wheat	plastid	33.4	29.94
TraesCS6D01G282900.1	Wheat	plastid	20.82	18.7
TraesCS7D01G400900.3	Wheat	cytosol	16.29	15.22
TraesCS3D01G529200.1	Wheat	plastid	17.32	13.75
TraesCS2D01G193100.1	Wheat	plastid	22.27	13.62
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	14.43	11.8
TraesCS7D01G482800.1	Wheat	plastid	19.79	11.79
TraesCS5D01G097800.1	Wheat	plastid	18.76	10.63
TraesCS2D01G244500.3	Wheat	plastid	17.11	9.9
TraesCS5D01G500300.1	Wheat	plastid	17.11	9.54

Protein Annotations

EnsemblPlants:TraesCS4D01G353200.2	EnsemblPlantsGene:TraesCS4D01G353200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
TMHMM:TMhelix	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:503964729..503966284

Molecular Weight (calculated)

54796.9 Da

IEP (calculated)

5.613

GRAVY (calculated)

-0.035

Length

485 amino acids

Sequence
(BLAST)

001: MAQRGRRLPS SAPPEAEQPD EALARILRTE AAVSGVPRKA AAGSSQHSTR LWPRAVLEAL DSAVASSRWE SALEIFELLR KQRWYEPRTQ TYARLLMMLG
101: RCRQPGPATA LFKVMLSEER LAPTVDVYTA LVGAYGYSGL LDEALATVDL MKGADADCKP DEYTFSVLIN CCCKSRRFDL IPTVLDEMSY LGVGCNVVIH
201: NGIIDGYGKA GMLEEMEDAL SNMLQDGDNV PDIYTMNSII WAYGNRGRVD DMERWYGEFQ LMGVEPDTWT FNIMMKSYGK ANMPDKMLSI LKYMKRRFFS
301: PSAATFNIII DCFGRAGNIE KMEYYFRLMK IQGVKPNPIT YCSLVNGYSK AGLLDMIPAI IRQTENTDVV LDTPFFNCVI SAYFKSGDTK IMEEMLVLMN
401: EKKCKPDKVI YTTMIQAYIA HGMDEAAKLL ETEMERFDKK LLVSALLYLR EFFLLLLLLI YACIKLPIIQ GIHWLSLFFE SGTSS

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.