Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G495500.1 | Wheat | plastid | 97.3 | 97.66 |
| TraesCS7B01G401800.2 | Wheat | plastid | 97.17 | 97.06 |
| KXG20531 | Sorghum | plastid | 80.1 | 84.02 |
| Zm00001d036698_P001 | Maize | plastid | 79.36 | 82.19 |
| Os05t0275000-01 | Rice | cytosol, plastid | 79.73 | 81.84 |
| HORVU7Hr1G111000.5 | Barley | plastid | 80.22 | 80.02 |
| GSMUA_Achr2P04910_001 | Banana | plastid | 54.67 | 53.42 |
| VIT_11s0052g00600.t01 | Wine grape | plastid | 52.33 | 51.89 |
| CDY29249 | Canola | plastid | 51.23 | 51.04 |
| Bra024454.1-P | Field mustard | plastid | 50.98 | 50.8 |
| CDY56509 | Canola | plastid | 50.74 | 50.49 |
| AT2G18940.1 | Thale cress | plastid | 50.98 | 50.49 |
| KRH12254 | Soybean | plastid | 49.51 | 48.61 |
| Solyc07g017760.1.1 | Tomato | plastid | 50.12 | 48.46 |
| KRH37281 | Soybean | plastid | 49.26 | 48.31 |
| PGSC0003DMT400010473 | Potato | plastid | 49.51 | 47.86 |
| TraesCS2D01G193100.1 | Wheat | plastid | 31.7 | 32.53 |
| TraesCS7D01G400900.3 | Wheat | cytosol | 13.27 | 20.81 |
| TraesCS2D01G244500.3 | Wheat | plastid | 21.25 | 20.64 |
| TraesCS6D01G282900.1 | Wheat | plastid | 13.39 | 20.19 |
| TraesCS4D01G353200.2 | Wheat | cytosol | 11.79 | 19.79 |
| TraesCS4D01G132900.3 | Wheat | plastid | 13.02 | 19.59 |
| TraesCS5D01G500300.1 | Wheat | plastid | 20.39 | 19.08 |
| TraesCS5D01G097800.1 | Wheat | plastid | 19.53 | 18.57 |
| TraesCS3D01G529200.1 | Wheat | plastid | 12.9 | 17.18 |
| TraesCS6D01G147800.2 | Wheat | cytosol, mitochondrion | 12.16 | 16.69 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.12.4.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 | PFAM:PF12854 |
| PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF343 | InterPro:Pentatricopeptide_repeat |
| SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS7D01G482800 | EnsemblPlants:TraesCS7D01G482800.1 | SEG:seg |
Description
No Description!
Coordinates
chr7D:-:593119075..593121519
Molecular Weight (calculated)
89827.6 Da
IEP (calculated)
8.714
GRAVY (calculated)
-0.204
Length
814 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATGRGVFP NKPTLPSGPK KRAPPSQQTL LPAAPPPQAP SSLPLDSFLL HLTAAPAPAP APVPRRSHQQ PPHHQHHHPT PTPASSFLSP AAQALVLELS
101: ATPLPALPAF LAARRDDLLR AADLPSLLKA LELSGHWEWA LALLRWARSE GAAEGAAPLE MVVRALGREG RHDAVCALLD EMPLPPGARL DVRAYTTVLH
201: ALSREGRYER ALRLFDELRR EGVAPTRVTY NVVLDVYGRM GRSWPRVVAL LDEMRAAGVE PDGFTASTVI AAAGRDGLVD EAVAFFEDLK ARGHAPCVVT
301: YNALLQVFGK AGNYTEALRV IKEMEDAGCK PDAVTYNELA GSYARAGFYQ EAAKCLDTMI GKGLLPNTFT YNTIMTAYGN AGKVDEALAL FDRMKKNGFV
401: PYTNTYNLVL GMLGKKSRFA AMLEMLGEMS RSGCTPNRVT WNTLLAVCGK RGMESYVTRV LEGMKSCRVE LCRDTYNTLI CAYGRCGSRA NAFKMYDEMT
501: AAGFAPCLTT YNALLNVLSR QGDWTAARSI VSKMKSEGFK PNDMSYSLLL QCHAKGGNAA GIEAIEKEVY QGTIFPSWVI LRTLVIANFK CRRLDGIERA
601: FQEVKARGHK PDLVILNSML SIYAKNGMYS KAMEMYESIE QSGLSPDLIT YNSLMDMYAK SNEPWEAEKI LKRLRSSQSQ QQQQLKPDVV SYNTVINGFC
701: KEGLIKEAQR VLSEMIADGV APCVITYHTL VGGYASREMF AEAREVVGYM IQRKLRPMEL TYKRVVDSYC RAKRYEEARE FLAVVEETDP KSDQKLLGAL
801: AARVESAQFG EMRR
101: ATPLPALPAF LAARRDDLLR AADLPSLLKA LELSGHWEWA LALLRWARSE GAAEGAAPLE MVVRALGREG RHDAVCALLD EMPLPPGARL DVRAYTTVLH
201: ALSREGRYER ALRLFDELRR EGVAPTRVTY NVVLDVYGRM GRSWPRVVAL LDEMRAAGVE PDGFTASTVI AAAGRDGLVD EAVAFFEDLK ARGHAPCVVT
301: YNALLQVFGK AGNYTEALRV IKEMEDAGCK PDAVTYNELA GSYARAGFYQ EAAKCLDTMI GKGLLPNTFT YNTIMTAYGN AGKVDEALAL FDRMKKNGFV
401: PYTNTYNLVL GMLGKKSRFA AMLEMLGEMS RSGCTPNRVT WNTLLAVCGK RGMESYVTRV LEGMKSCRVE LCRDTYNTLI CAYGRCGSRA NAFKMYDEMT
501: AAGFAPCLTT YNALLNVLSR QGDWTAARSI VSKMKSEGFK PNDMSYSLLL QCHAKGGNAA GIEAIEKEVY QGTIFPSWVI LRTLVIANFK CRRLDGIERA
601: FQEVKARGHK PDLVILNSML SIYAKNGMYS KAMEMYESIE QSGLSPDLIT YNSLMDMYAK SNEPWEAEKI LKRLRSSQSQ QQQQLKPDVV SYNTVINGFC
701: KEGLIKEAQR VLSEMIADGV APCVITYHTL VGGYASREMF AEAREVVGYM IQRKLRPMEL TYKRVVDSYC RAKRYEEARE FLAVVEETDP KSDQKLLGAL
801: AARVESAQFG EMRR
001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES
Arabidopsis Description
Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.