Factsheet for Solyc07g017760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010473	Potato	plastid	97.74	97.74
VIT_11s0052g00600.t01	Wine grape	plastid	69.72	71.5
AT2G18940.1	Thale cress	plastid	63.66	65.21
Bra024454.1-P	Field mustard	plastid	62.0	63.89
CDY29249	Canola	plastid	61.88	63.77
KRH12254	Soybean	plastid	62.47	63.45
CDY56509	Canola	plastid	61.4	63.2
KRH37281	Soybean	plastid	61.76	62.65
GSMUA_Achr2P04910_001	Banana	plastid	57.72	58.34
KXG20531	Sorghum	plastid	49.41	53.61
Zm00001d036698_P001	Maize	plastid	49.41	52.93
Os05t0275000-01	Rice	cytosol, plastid	49.29	52.33
TraesCS7A01G495500.1	Wheat	plastid	48.34	50.19
TraesCS7D01G482800.1	Wheat	plastid	48.46	50.12
TraesCS7B01G401800.2	Wheat	plastid	48.46	50.06
HORVU7Hr1G111000.5	Barley	plastid	44.3	45.71
Solyc01g107320.2.1	Tomato	plastid	34.92	35.9
Solyc08g045780.2.1	Tomato	cytosol	12.95	23.7
Solyc08g045850.2.1	Tomato	nucleus	18.65	22.46
Solyc01g006500.2.1	Tomato	plastid	12.95	22.34
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	9.86	21.78
Solyc12g098990.1.1	Tomato	plastid	12.11	20.61
Solyc04g054270.2.1	Tomato	plastid	11.52	20.29
Solyc01g057200.2.1	Tomato	plastid	11.28	20.21
Solyc03g113630.2.1	Tomato	nucleus	20.19	19.77
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	14.49	19.58
Solyc06g009520.2.1	Tomato	nucleus, plastid	19.36	19.38
Solyc04g015950.1.1	Tomato	plastid	19.0	18.82
Solyc07g043600.2.1	Tomato	nucleus	12.35	17.93

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4CCJ0
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc07g017760.1	EnsemblPlants:Solyc07g017760.1.1	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276C1B4	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:7943396..7945924

Molecular Weight (calculated)

95570.6 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.247

Length

842 amino acids

Sequence
(BLAST)

001: MEGSLFPNRP ILPIQSTKPT PLPPTQRLKL NPTTTTSPLP PLKQQQQQTP SSSTSTSFPL DSLLQHLLHV SSSNPPRTVK SSRISNTHLS TLPVSLENDD
101: TLFGNTRVTV PKMESFDDGS LEFLPLNCKL MIDSILERPL SHMTEFFDSV KLELLEVDLM SLLKGLDVLG KWDRAILLFE WAVLNIHVEN EKLDSQVIEF
201: MVKVLGRESQ HLVTSKLFDV IPFEDYSLDV RAWTTVLHAY SRIGKYDKAI ALFEYVKEKG LSVTLVTYNV MLDVYGKKGR SWNNILLLLD EMTSNGLEFD
301: EFTCSTVIAA CGREGLLEEA KEFFDVLKRK GYVPGTVTYN SLLQVFGKAG IYSEALRVLK EMEENNCPPD SVTYNELVAA YVRAGFLEEG AALIGTMTQK
401: GVMPNAITYT TVIDAYGKAG KEDKALSFFK QMKQAGCVPN VCTYNAIIGM LGKKSRVEEM MDMISDMKLN GCAPNRITWN TMLAMCGNRG MQKYVNHVFH
501: EMKSCGFEPD RDTFNTLIRA YGRCDSDFNA AKMYDEMIQS GFTPCVTTYN ALLNALARRG DWRAAESVFS DMKSKGFKPS ETTYSLMLHC YSKGGNVRGV
601: ERIAKEIYDG HIFPSWMLLR TLILANFKCR SLMGMERAFQ ELQKNGYRPD LVIFNSMLSI FARNKLYDRA HEVLHLIREN GLQPDLVTYN SLMDMYARAG
701: ECWKAEEILN RLQKNGGKPD LVSYNTVIKA FCRQGRMEEA IRVFSQMTEK GIRPCIVTYN TFMAGFAARG MFSEVNELIS YMIQHKCRPN ELTYKTIVDG
801: YCKAKRYQDA MDFVLNIKEK DNTFDEESLQ RFASRVRENM ES

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.