Factsheet for Solyc06g009520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018827	Potato	cytosol	87.75	97.62
VIT_07s0005g01660.t01	Wine grape	plastid	70.87	68.74
CDY15384	Canola	cytosol	32.58	64.32
CDY19091	Canola	cytosol	54.46	62.83
Bra018247.1-P	Field mustard	nucleus	22.24	61.72
CDY56616	Canola	plastid	55.65	59.32
CDY10802	Canola	plastid	59.22	58.66
Os12t0562300-01	Rice	cytosol	20.45	56.21
AT2G31400.1	Thale cress	plastid	61.12	55.99
GSMUA_Achr2P02090_001	Banana	cytosol	43.16	55.85
Bra019526.1-P	Field mustard	cytosol	17.36	55.3
Bra018246.1-P	Field mustard	plastid	32.22	54.86
KRH01436	Soybean	plastid	49.11	47.2
KRH45156	Soybean	plastid	49.23	47.15
TraesCS5D01G097800.1	Wheat	plastid	47.21	46.38
TraesCS5B01G091600.1	Wheat	plastid	47.21	46.27
TraesCS5A01G085800.1	Wheat	plastid	47.09	46.15
Zm00001d030624_P001	Maize	plastid	47.32	45.75
EES16159	Sorghum	plastid	47.32	45.64
Bra021733.1-P	Field mustard	cytosol	56.36	43.17
HORVU5Hr1G022350.1	Barley	plastid	23.66	38.72
Solyc04g054270.2.1	Tomato	plastid	13.2	23.22
Solyc03g113630.2.1	Tomato	nucleus	22.0	21.51
Solyc01g107320.2.1	Tomato	plastid	20.33	20.88
Solyc08g045780.2.1	Tomato	cytosol	10.82	19.78
Solyc07g017760.1.1	Tomato	plastid	19.38	19.36
Solyc04g015950.1.1	Tomato	plastid	19.38	19.18
Solyc08g045850.2.1	Tomato	nucleus	15.93	19.17
Solyc01g006500.2.1	Tomato	plastid	10.82	18.65
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	13.32	17.98
Solyc01g057200.2.1	Tomato	plastid	9.39	16.81
Solyc07g043600.2.1	Tomato	nucleus	11.41	16.55
Solyc12g098990.1.1	Tomato	plastid	9.27	15.76
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	7.13	15.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0010019	GO:GO:0016787	GO:GO:0031930	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4C3Y2	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177
InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF366	InterPro:Pentatricopeptide_repeat
SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	EnsemblPlantsGene:Solyc06g009520.2	EnsemblPlants:Solyc06g009520.2.1
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002766EB6	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:3498359..3503631

Molecular Weight (calculated)

93134.3 Da

IEP (calculated)

7.772

GRAVY (calculated)

-0.205

Length

841 amino acids

Sequence
(BLAST)

001: MASSTPPPHC ALTTSKPYQP QTHSHPHPNH RNNHQRHWSS QKVSLNPPRN PNHPSQTPNF LSLSSSKSDF SADFSGRRST RFVSKMHFGR AKISGNGRHS
101: SFAQEALEEA IRCCNNEAGL DQVLLTFGSK LVGSDDYTFL FRELGNRGEW LAAMRCFQFA VGRERKRNEQ GKLASSMISI LGRSGKVDLA EKVFENAVSD
201: GYGSTVYAYS ALISAYAKSG YCNEAIRVFE TMKDSGLKPN LVTYNALIDA CGKGGADFKR ASEIFDEMLR NGVQPDRITF NSLLAVCSGA GLWETARGLF
301: NEMIYRGIDQ DIYTYNTFLD VACNGGQIDV AFDIMSEMHA KNILPNQVTY STVIRGCAKA GRLDKALSLF NEMKCAGIKL DRVSYNTLLA IYASLGKFEE
401: ALNVSKEMEG MGIKKDVVTY NALLDGFGKQ GMYTKVKQLF AEMKAEKLSP NLLTYSTLIS VYLKGALYHD AVEVYKEFKK QGLKADVVFY SKLIDALCKK
501: GLVEYSSLLL NEMTKEGIQP NVVTYNSIIN AFGESANNEC GSDNVTHIVS AISQSKWENT EEDNIVKIFE QLAAQKSASG KKTNAERQDM LCILGVFHKM
601: HELQIKPNVV TFSAILNACS RCSSFDEASL LLEELRLFDN QVYGVAHGLL MGQREGVWSQ ALSLFNEVKQ MDSSTASAFY NALTDMLWHF DQKQGAQLVV
701: LEGKRSEVWE NTWSTSCLDL HLMSSGAACA MVHAWLLSIR SIVFEGHELP KMLSILTGWG KHSKITGDGA LKRAIEGLLT SIGAPFQIAK CNIGRFISTG
801: AVVTAWLRES GTLEVLVLQD DTSHLRATRF DQISNLQQLT L

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.