Factsheet for Solyc10g080330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, endoplasmic reticulum, mitochondrion

Predictor Summary:

plastid 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 2
vacuole 1
cytosol 1
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060882	Potato	mitochondrion	89.24	62.5
CDY64953	Canola	cytosol	39.37	51.55
GSMUA_Achr1P10690_001	Banana	cytosol	44.09	50.76
VIT_16s0039g02560.t01	Wine grape	cytosol	61.15	47.55
Bra035352.1-P	Field mustard	mitochondrion	55.91	44.19
CDX74617	Canola	mitochondrion	40.42	43.87
HORVU0Hr1G007320.4	Barley	cytosol	52.76	43.6
AT5G36300.2	Thale cress	cytosol	37.53	43.33
KRH27783	Soybean	cytosol, plastid	58.79	42.91
Os06t0710800-01	Rice	cytosol	54.86	42.48
KRH77730	Soybean	plastid	58.01	42.26
OQU77078	Sorghum	mitochondrion	53.54	41.3
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	54.07	40.39
TraesCS7A01G407400.1	Wheat	cytosol	47.51	39.61
TraesCS7D01G400900.3	Wheat	cytosol	53.54	39.31
TraesCS7B01G307500.2	Wheat	cytosol	53.28	39.11
Zm00001d014751_P003	Maize	plastid	45.67	32.71
Solyc08g045850.2.1	Tomato	nucleus	36.48	19.89
Solyc08g045780.2.1	Tomato	cytosol	17.59	14.57
Solyc04g054270.2.1	Tomato	plastid	14.7	11.72
Solyc01g006500.2.1	Tomato	plastid	14.7	11.48
Solyc12g098990.1.1	Tomato	plastid	14.7	11.31
Solyc01g107320.2.1	Tomato	plastid	23.36	10.87
Solyc01g057200.2.1	Tomato	plastid	13.12	10.64
Solyc07g043600.2.1	Tomato	nucleus	15.75	10.34
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	16.54	10.11
Solyc07g017760.1.1	Tomato	plastid	21.78	9.86
Solyc03g113630.2.1	Tomato	nucleus	17.06	7.56
Solyc04g015950.1.1	Tomato	plastid	16.27	7.29
Solyc06g009520.2.1	Tomato	nucleus, plastid	15.75	7.13

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4D2S3
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF483	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc10g080330.1	EnsemblPlants:Solyc10g080330.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002769340	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:61614306..61616943

Molecular Weight (calculated)

44088.9 Da

IEP (calculated)

7.015

GRAVY (calculated)

-0.192

Length

381 amino acids

Sequence
(BLAST)

001: MRQKLLFRSS PAICPHIVWG FVPVCLKHHI NPVKHKLLHT SCQLILNQET YEILLEYYVS AGRLEDTWLI VAKMRRESYP LNSFVYSKII ELYRDNGMWK
101: KALGIVEEIR EMGLRLDKRL FNSIIDTFGK YGELGEALGM FDKMRQEGIK PDFRTWNSLI RWHCKYGHLD TAIELFNEMQ EQGLYPDPKI FIIINTHLVE
201: QGRWDDIDTI LESMQGRGHH KSGAIYAVLV DIYGQQGRFE DAEYCLNALK LEGLQLSPSI FCVLAHAYAQ QGLCEQTVKV LQIMEAEGME PNLIMLNMLI
301: NAFGNAGRHM EAQSIYQHIK EMGITPDVIT YSTLMKAFLR AKKFDQVPKI YSEMESTGCT PDRKAREMLQ SALMILEQRH C

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.