CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64953	Canola	cytosol	80.06	96.56
Bra035352.1-P	Field mustard	mitochondrion	99.72	72.61
AT5G36300.2	Thale cress	cytosol	62.96	66.97
GSMUA_Achr1P10690_001	Banana	cytosol	44.16	46.83
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	43.87	40.42
VIT_16s0039g02560.t01	Wine grape	cytosol	54.99	39.39
KRH77730	Soybean	plastid	52.99	35.56
KRH27783	Soybean	cytosol, plastid	52.71	35.44
Os06t0710800-01	Rice	cytosol	47.29	33.74
PGSC0003DMT400060882	Potato	mitochondrion	51.57	33.27
OQU77078	Sorghum	mitochondrion	45.87	32.59
TraesCS7D01G400900.3	Wheat	cytosol	46.72	31.6
TraesCS7A01G407400.1	Wheat	cytosol	40.46	31.07
HORVU0Hr1G007320.4	Barley	cytosol	40.74	31.02
TraesCS7B01G307500.2	Wheat	cytosol	45.58	30.83
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	44.73	30.78
Zm00001d014751_P003	Maize	plastid	38.75	25.56
CDY31603	Canola	plastid	36.18	19.16
CDX71562	Canola	mitochondrion, plastid	36.75	18.45
CDY41990	Canola	plastid	15.67	11.68
CDY42639	Canola	plastid	15.67	11.39
CDX98345	Canola	cytosol	9.69	10.93
CDX71198	Canola	cytosol	17.09	10.6
CDX85360	Canola	plastid	14.81	10.3
CDX86283	Canola	plastid	14.81	10.24
CDX78150	Canola	plastid	13.39	9.69
CDX73576	Canola	plastid	13.39	9.42
CDY06027	Canola	plastid	14.24	9.42
CDX71917	Canola	plastid	14.24	9.17
CDY24692	Canola	plastid	12.54	9.17
CDY32056	Canola	plastid	21.08	9.15
CDY05264	Canola	plastid	12.54	8.98
CDX84260	Canola	cytosol, nucleus, plastid	16.24	8.86
CDY31666	Canola	cytosol	15.67	8.83
CDX79920	Canola	cytosol, plastid	20.23	8.69
CDY23832	Canola	plastid	20.23	8.68
CDY56509	Canola	plastid	19.09	8.19
CDY29249	Canola	plastid	18.8	8.08
CDX73117	Canola	plastid	18.52	7.53
CDY45398	Canola	plastid	18.52	7.52
CDY15384	Canola	cytosol	8.26	6.81
CDY19091	Canola	cytosol	13.39	6.45
CDY10802	Canola	plastid	15.1	6.24
CDY56616	Canola	plastid	13.11	5.83
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX74617	EnsemblPlantsGene:GSBRNA2T00114585001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF483
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX74617	ProteinID:CDX74617.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EF3417	MapMan:35.1	:	:

Description

BnaA04g07720D

Coordinates

chrLK031801:-:2037013..2039341

Molecular Weight (calculated)

39682.3 Da

IEP (calculated)

9.047

GRAVY (calculated)

-0.262

Length

351 amino acids

Sequence
(BLAST)

001: MMMSLRTYGS PLPTRYSRRR PVNGCSNHPV SRQIVTEELS ISTYNRRIRY RCRTGGIDEA MSLLAKLDSL GSQPDPLSYV TLIETLSALG RTLEADALFQ
101: EVIRSGLHGS YPLRFHNALL GGYLRKGQLA LEESWRVVNE MKKRKFPLTS FVYGKIIRIY RDNGMWKKAL GIIEEICEIG LPMDVELYNS IIDTFGKYGE
201: LDEALQFGSF QDPEELVGRL KSEGVAPSAN IFCTLADAYA QQGLCKQTVK VLKMMEKEGT EPNLIMLNVL INAFGNAGKH MEALSIYHHI KESGFTPDVV
301: TYSTLMKAFT RAKKYEKVPE IFREMEASGC SADRKARQLL QNALMVLDKR H

Best Arabidopsis Sequence Match ( AT5G36300.2 )
(BLAST)

001: MAPISHTRIS LSMYNSWIRY FCRTGETNEA MSLLAEIHSL GSRPDPLSYV SFIETLASLR RTLEADALFH EVVRFMIYGS YSVRLYNALV SRYLRKEVSW
101: RVVNEMKKRK FRLNSFVYGK IIRIYRDNGM WKKALGIVEE IREIGLPMDV EIYNSVIDTF GKYGELDEEL QVLEKLQRSS DSRPNIRTWN SLIRWHCHHG
201: AVDMALELFT MIFEDIGELV GKLKSQGVAP SANLFCTLAN AYAQQGLCKQ TVKVLKMMEN EGIEPNLIML NVLINAFGTA GKHMEALSIY HHIKETVWIH
301: PDVVTYSTLM KAFTRAKKYE MVCSFYLVTL

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At5g36300 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.