CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41990	Canola	plastid	95.86	98.3
Bra011847.1-P	Field mustard	plastid	95.24	94.65
AT4G39620.1	Thale cress	plastid	89.23	76.55
VIT_07s0031g01360.t01	Wine grape	plastid	67.49	66.67
PGSC0003DMT400033331	Potato	plastid	62.94	63.73
Solyc04g054270.2.1	Tomato	plastid	62.73	63.39
KRH59429	Soybean	plastid	65.84	63.22
KRH43291	Soybean	plastid	65.22	59.89
GSMUA_Achr5P22880_001	Banana	plastid	61.28	58.04
Zm00001d052240_P001	Maize	plastid	59.63	57.72
KXG30749	Sorghum	plastid	58.59	56.83
Os02t0750400-01	Rice	cytosol	22.98	52.36
TraesCS6D01G282900.1	Wheat	plastid	58.39	52.22
TraesCS6A01G303300.1	Wheat	plastid	58.39	52.22
TraesCS6B01G332800.1	Wheat	plastid	57.76	49.29
HORVU6Hr1G075250.5	Barley	plastid	50.93	49.2
CDY24692	Canola	plastid	22.36	22.5
CDX86283	Canola	plastid	23.4	22.24
CDX85360	Canola	plastid	22.98	21.98
CDY05264	Canola	plastid	22.15	21.84
CDX78150	Canola	plastid	20.91	20.82
CDX73576	Canola	plastid	20.5	19.84
CDY64953	Canola	cytosol	10.77	17.87
CDX74617	Canola	mitochondrion	11.39	15.67
CDX71198	Canola	cytosol	16.77	14.31
CDY31666	Canola	cytosol	18.43	14.29
CDX84260	Canola	cytosol, nucleus, plastid	18.84	14.15
CDY31603	Canola	plastid	18.43	13.42
CDX71562	Canola	mitochondrion, plastid	18.84	13.02
CDY06027	Canola	plastid	13.66	12.43
CDX71917	Canola	plastid	13.66	12.11
CDY56509	Canola	plastid	20.5	12.1
CDY29249	Canola	plastid	20.29	12.0
CDY19091	Canola	cytosol	17.6	11.66
CDY32056	Canola	plastid	18.63	11.12
CDX73117	Canola	plastid	19.88	11.12
CDX79920	Canola	cytosol, plastid	18.63	11.02
CDY23832	Canola	plastid	18.43	10.88
CDY45398	Canola	plastid	19.46	10.88
CDY15384	Canola	cytosol	9.52	10.8
CDX98345	Canola	cytosol	6.83	10.61
CDY10802	Canola	plastid	17.39	9.89
CDY56616	Canola	plastid	15.53	9.51
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078HZ76	EnsemblPlants:CDY42639	ProteinID:CDY42639	ProteinID:CDY42639.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00075146001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE34CF	SEG:seg	:	:

Description

BnaC01g00510DBnaC01g00510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ76]

Coordinates

chrLK032530:+:187794..190129

Molecular Weight (calculated)

55526.7 Da

IEP (calculated)

9.643

GRAVY (calculated)

-0.375

Length

483 amino acids

Sequence
(BLAST)

001: MAVDYLLTSP SSLRLSNFIS SFSPNTNHKC LRFSPKPSSA RITCGAISSK RKLAEREIAE RENRVLVRNL MSRISDREPL VKTLDKYVKV VRCEHCFLLF
101: EELGKSDKWL QCLEVFRWMQ KQRWYIADNG VYSKLISVMG KKGQTRMAMW LFSEMKNSGC RPDASVYNAL ITAHLHTRDK AKALEKVLGY FDKMKGMERC
201: QPNVVTYNIL LRAFAQSGKV DQVNALFKDL DMSAVSPDVY TFNGVMDAYG KNGMIKEMES VLTRMRSNEC KPDIITFNLL IDSYGKKQEF EKMEQTFKSL
301: IRSKEKPTLP TFNSMIINYG KARLRDKAEW VFEKMNDMNY APSFITYECM IMMYGYCGCV SRAREVFEEV VESERVLKAS TLNAMLEVYC LNGLHMEADK
401: LFHNASGFRV HPDASTYKLL YKAYTKADMK EHVQMLMKKM EKDGIVPNKR FFLEALEAFG SRLPGSDSVK RKSTGSSRPP GLD

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.