Factsheet for PGSC0003DMT400033331

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054270.2.1	Tomato	plastid	96.86	96.65
VIT_07s0031g01360.t01	Wine grape	plastid	69.18	67.48
CDY41990	Canola	plastid	63.31	64.12
CDY42639	Canola	plastid	63.73	62.94
KRH59429	Soybean	plastid	66.25	62.82
Bra011847.1-P	Field mustard	plastid	62.68	61.52
GSMUA_Achr5P22880_001	Banana	plastid	64.15	60.0
KRH43291	Soybean	plastid	65.62	59.51
KXG30749	Sorghum	plastid	61.22	58.63
Zm00001d052240_P001	Maize	plastid	60.59	57.92
Os02t0750400-01	Rice	cytosol	23.9	53.77
TraesCS6D01G282900.1	Wheat	plastid	60.8	53.7
TraesCS6A01G303300.1	Wheat	plastid	60.8	53.7
AT4G39620.1	Thale cress	plastid	62.68	53.11
TraesCS6B01G332800.1	Wheat	plastid	60.8	51.24
HORVU6Hr1G075250.5	Barley	plastid	53.67	51.2
PGSC0003DMT400082022	Potato	plastid	22.64	22.13
PGSC0003DMT400008123	Potato	cytosol, plastid	21.17	22.0
PGSC0003DMT400011734	Potato	plastid	20.34	19.6
PGSC0003DMT400022191	Potato	plastid	20.13	19.16
PGSC0003DMT400027006	Potato	cytosol, plastid	20.75	17.19
PGSC0003DMT400060882	Potato	mitochondrion	16.35	14.34
PGSC0003DMT400030453	Potato	mitochondrion	20.13	13.77
PGSC0003DMT400018827	Potato	cytosol	20.96	13.23
PGSC0003DMT400041148	Potato	plastid	15.3	12.76
PGSC0003DMT400066525	Potato	plastid	20.34	11.79
PGSC0003DMT400010473	Potato	plastid	20.55	11.64
PGSC0003DMT400063174	Potato	plastid	19.5	10.81

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102582767	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1AYY9	PFAM:PF01535	PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG400012802
PGSC:PGSC0003DMG400012802	EnsemblPlants:PGSC0003DMT400033331	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294E6CE	RefSeq:XP_006354698.2	RefSeq:XP_006354699.2
RefSeq:XP_015167479.1	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012802]

Coordinates

chr4:-:53057725..53061960

Molecular Weight (calculated)

54405.3 Da

IEP (calculated)

9.580

GRAVY (calculated)

-0.324

Length

477 amino acids

Sequence
(BLAST)

001: MTTLQFSSSS SVQLPSSTTT MPWLNLQKKR PVFSIIHCVS TRPGGRKSGY GSSSSEAQEL VTLVMRNFSD KKPLVSTLDK YVKLVRTEHC FLLFEQLGKT
101: DNWLQCLEVF RWMQKQRWYI ADNGVYSKLI SVMGKKGQIR MAMWLFSEMR NSGCRPDTSV YNAVISAHLH SRDKSKALTK AMGYFEKMKG MERCSPSIVT
201: YNILLRAFAQ AKNVEQVDAL LKDLDESIVT PDIFTFNGLM DAYGKNGMIN EMEHILSRMK SNQLKPDIIT FNILIDSYGK KQDFQKMEQV FKSLLQSKEK
301: PTIPTFNSMI TNYGKARLRE KSELVLEKMI DLGYKPSYIT YECLIVMYGH CDCVAKAREL FDRVIESETE KKASTLNSML DAYCMNGLPM EAHLLFESIH
401: SAKVFPIDSS TYKLLYKAYT KADMKELVQK LLTCMDEDGI IPNKKFFLDA LGAFGSAPTN RREVGDNKGL SKHKGRK

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.