Factsheet for VIT_07s0031g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054270.2.1	Tomato	plastid	68.1	69.67
PGSC0003DMT400033331	Potato	plastid	67.48	69.18
CDY41990	Canola	plastid	65.64	68.15
CDY42639	Canola	plastid	66.67	67.49
KRH59429	Soybean	plastid	68.71	66.8
Bra011847.1-P	Field mustard	plastid	64.83	65.23
GSMUA_Achr5P22880_001	Banana	plastid	66.46	63.73
KRH43291	Soybean	plastid	67.89	63.12
Zm00001d052240_P001	Maize	plastid	60.12	58.92
KXG30749	Sorghum	plastid	59.92	58.84
Os02t0750400-01	Rice	cytosol	24.95	57.55
AT4G39620.1	Thale cress	plastid	65.03	56.48
TraesCS6A01G303300.1	Wheat	plastid	60.12	54.44
TraesCS6D01G282900.1	Wheat	plastid	60.12	54.44
HORVU6Hr1G075250.5	Barley	plastid	53.17	52.0
TraesCS6B01G332800.1	Wheat	plastid	59.51	51.41
VIT_07s0005g06720.t01	Wine grape	cytosol	18.61	22.98
VIT_05s0020g00690.t01	Wine grape	plastid	22.7	22.29
VIT_13s0064g00400.t01	Wine grape	cytosol	22.49	22.22
VIT_16s0039g02560.t01	Wine grape	cytosol	18.61	18.57
VIT_01s0011g01970.t01	Wine grape	cytosol	18.61	15.64
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	21.27	14.96
VIT_12s0028g01140.t01	Wine grape	cytosol	15.95	14.23
VIT_03s0091g00440.t01	Wine grape	plastid	22.49	13.56
VIT_07s0005g01660.t01	Wine grape	plastid	22.49	12.69
VIT_17s0000g07500.t01	Wine grape	plastid	22.09	12.43
VIT_11s0052g00600.t01	Wine grape	plastid	20.25	12.06
VIT_08s0007g08590.t01	Wine grape	cytosol	20.25	11.62

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100249090	wikigene:100249090	MapMan:35.1	ProteinID:CBI21486	ProteinID:CBI21486.3
UniProt:D7SW37	EMBL:FN595233	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100249090
wikigene:LOC100249090	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C9A93	ArrayExpress:VIT_07s0031g01360
EnsemblPlantsGene:VIT_07s0031g01360	EnsemblPlants:VIT_07s0031g01360.t01	RefSeq:XP_002276540	RefSeq:XP_002276540.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:17437865..17441232

Molecular Weight (calculated)

55820.1 Da

IEP (calculated)

10.163

GRAVY (calculated)

-0.406

Length

489 amino acids

Sequence
(BLAST)

001: MPSIVSSSPS SLQLYSSSTL SPTFTLPSSR FYKPTRLHLP PRPSTTVVSC VSTRPRRKPG PKPDKSEVEE LVRVLMKNFG GERPLISTLN KYVKVIRTEH
101: CFRLFEELGK TDKWLQCLEV FRWMQKQRWY IADNGVYSKL ISVMGKKGQT RMAMWLFSEM RNSGCRPDTS VYNALITAHL HSRDKSKALI KALGYFDKMK
201: GMERCKPNIV TYNILLRAFA QAQNVNQANA LFKELNESIV SPDIFTFNGV MDAYGKNGMI KEMESVLSRM KSNQCKPDII TFNVLIDSYG RRQEFDKMEQ
301: VFKSLLRSKE KPTLPTFNSM ITNYGKARLK EKAENVFKKM TDMGYAPNFI TYESLIMMYG FCDCISRARE IFDEMMASKK EMKVSTLNAM LEVYCMNGLP
401: MEADLLLERA RKNRPFPGSS TYKLLYKAYT KADQKELLEK LLKLMDSDGI LPNKRFFLEA LGAFGSSPAS QESAGSTTGL TRPRNSAKT

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.