Factsheet for VIT_01s0011g01970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027006	Potato	cytosol, plastid	73.88	74.65
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	74.91	69.76
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	73.71	68.86
GSMUA_Achr7P03530_001	Banana	cytosol	69.59	68.76
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	67.7	64.27
Os02t0170000-02	Rice	cytosol	51.03	63.33
CDY31666	Canola	cytosol	66.67	62.28
CDX84260	Canola	cytosol, nucleus, plastid	67.18	60.81
OQU84443	Sorghum	cytosol	62.54	60.17
Zm00001d015377_P003	Maize	plastid	60.14	58.63
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	57.22	51.63
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	65.81	50.39
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	45.88	45.03
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	47.08	43.7
TraesCS6A01G163600.2	Wheat	nucleus	46.22	42.63
VIT_07s0005g06720.t01	Wine grape	cytosol	16.67	24.49
VIT_13s0064g00400.t01	Wine grape	cytosol	16.67	19.6
VIT_12s0028g01140.t01	Wine grape	cytosol	18.38	19.53
VIT_05s0020g00690.t01	Wine grape	plastid	15.98	18.67
VIT_07s0031g01360.t01	Wine grape	plastid	15.64	18.61
VIT_03s0091g00440.t01	Wine grape	plastid	25.6	18.37
VIT_16s0039g02560.t01	Wine grape	cytosol	15.12	17.96
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	18.9	15.83
VIT_11s0052g00600.t01	Wine grape	plastid	21.82	15.47
VIT_07s0005g01660.t01	Wine grape	plastid	20.1	13.49
VIT_17s0000g07500.t01	Wine grape	plastid	19.42	13.0
VIT_08s0007g08590.t01	Wine grape	cytosol	17.87	12.21

Protein Annotations

MapMan:1.1.8.1.6.1	Gene3D:1.25.40.10	EntrezGene:100257798	wikigene:100257798	ProteinID:CCB50998	ProteinID:CCB50998.1
UniProt:F6HFR7	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100257798
wikigene:LOC100257798	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF421	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210A143	ArrayExpress:VIT_01s0011g01970	EnsemblPlantsGene:VIT_01s0011g01970	EnsemblPlants:VIT_01s0011g01970.t01	RefSeq:XP_002276864
RefSeq:XP_002276864.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:1692029..1696196

Molecular Weight (calculated)

66395.2 Da

IEP (calculated)

8.480

GRAVY (calculated)

-0.283

Length

582 amino acids

Sequence
(BLAST)

001: MYLWNRFHFE RERCCLFHLF FEPRSCKGDV QWRAENTNGG VVEKGKRDSL FIDKRGKFRS FNFKKQSRKK GGSLRGRGWK YGSGFVDGIF PVMSPIAQQI
101: LDFVQKEERS NRIWGSLDSL SPNHTTWDDI INVAVQLRLN KQWDAIVLIC GWILYRSSFH PDVICYNLLI DAYGQKSLYK KAESTYLELL EARCVPTEDT
201: YALLLKAYCT SGLLEKAEAV FAEMRKYGFP PSAVVYNAYI DGLMKGGDTQ KAVEIFERMK RDRCQPSTAT YTMLINLYGK ASKSYMALKV FHEMRSQKCK
301: PNICTFTALV NAFAREGLCE KAEEIFEQLQ EAGLEPDVYA YNALMEAYSR AGFPYGAAEI FSLMQHMGCE PDRASYNIMV DAYGRAGLHE DAQAVFEVMK
401: RLGITPTMKS HMLLLSAYSR AGKVAKCEEI VNQMHKSGIK PDTFVLNSML NLYGRLGQFE KMEEVLTAME KGPYPADIST YNILINIYGR AGFFARMEEL
501: FRSLPARNLI PDVVTWTSRI GAYSRRKQYN RCLEVFEEMI DAGCYPDGGT AKVLLSACSN GDQIQEVTTV IRTMHKDMRT SL

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.