Factsheet for VIT_12s0028g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06027	Canola	plastid	65.15	67.23
KRH36131	Soybean	plastid	67.7	67.09
PGSC0003DMT400041148	Potato	plastid	69.89	66.96
KRG90623	Soybean	nucleus	68.07	66.37
CDX71917	Canola	plastid	65.51	65.87
Solyc07g043600.2.1	Tomato	nucleus	69.71	65.86
AT3G59040.2	Thale cress	endoplasmic reticulum	65.88	61.19
EES13486	Sorghum	plastid	64.23	58.47
Zm00001d024248_P001	Maize	plastid	63.69	58.17
Os08t0191900-01	Rice	plastid	63.69	57.31
TraesCS3A01G523700.1	Wheat	plastid	62.96	56.74
TraesCS3D01G529200.1	Wheat	plastid	62.59	56.14
TraesCSU01G054500.1	Wheat	cytosol, plastid	62.59	56.14
HORVU3Hr1G114340.4	Barley	mitochondrion	62.59	54.1
CDX98345	Canola	cytosol	29.01	51.13
GSMUA_Achr8P07220_001	Banana	cytosol	66.97	33.73
VIT_07s0005g06720.t01	Wine grape	cytosol	15.15	20.96
VIT_01s0011g01970.t01	Wine grape	cytosol	19.53	18.38
VIT_13s0064g00400.t01	Wine grape	cytosol	16.61	18.38
VIT_05s0020g00690.t01	Wine grape	plastid	16.06	17.67
VIT_07s0031g01360.t01	Wine grape	plastid	14.23	15.95
VIT_16s0039g02560.t01	Wine grape	cytosol	13.5	15.1
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	18.98	14.96
VIT_03s0091g00440.t01	Wine grape	plastid	19.34	13.07
VIT_07s0005g01660.t01	Wine grape	plastid	19.16	12.11
VIT_11s0052g00600.t01	Wine grape	plastid	17.34	11.57
VIT_08s0007g08590.t01	Wine grape	cytosol	17.88	11.5
VIT_17s0000g07500.t01	Wine grape	plastid	17.52	11.05

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100250692	wikigene:100250692	MapMan:16.12.4.6	ProteinID:CBI22063	ProteinID:CBI22063.3
UniProt:E0CTZ7	EMBL:FN595235	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100250692
wikigene:LOC100250692	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF722
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C9D69	ArrayExpress:VIT_12s0028g01140
EnsemblPlantsGene:VIT_12s0028g01140	EnsemblPlants:VIT_12s0028g01140.t01	RefSeq:XP_002278350	RefSeq:XP_002278350.1	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:1701069..1713637

Molecular Weight (calculated)

62891.5 Da

IEP (calculated)

7.908

GRAVY (calculated)

-0.496

Length

548 amino acids

Sequence
(BLAST)

001: MMIGYTPLRN DTIFARALDL RDSTINPVPF RSVFAKPKST VVRTLEVVSM LAPRKFMQRR KKIEVFRDAA DEAEQRKWRR MMKEIEEVGS AVSVLSTKNQ
101: ALPRDLVLGT LVRFKQLKKW SLVSEILEWL QTQPWWDFSE MDFLMLVTAY GKQGDFNKAE RVFGDMHKKG YSPSVISHTA LMEAYGKGKQ YNKAESVFRR
201: MLSSGPEPSA LTYQLILKIF VEGNKFKEAE ETFETLLDDE KSPLKPDQKM FHMMIYMYRK AGNYEKARKI FGLMRERGVP QSTVTYNSLM SFETNYKEVS
301: KTYDQMQRAG LRPDVVSYAL LINAYGKARR EEEALAVFEE MLDAGVRPTH KAYNILLDAF AISGMVDQAR TVFKSMRRDR CTPDICSYTT MLSAYVNASD
401: MEGAEKFFRR LKQDGFEPNV VTYGTLIKGY AKISNLEKMM EKYEEMQVHG IKANQAIYTA MMDAYGKNKD FGSAVFWFKE MGFCGVPPDR KATNILLSLA
501: KTEAEKEEAN LLVGYSSKYS NGQMDNGSFK CADEDDDEDN SNDDDEVE

Best Arabidopsis Sequence Match ( AT3G59040.1 )
(BLAST)

001: MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.