Factsheet for VIT_18s0122g01380.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 6
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030453	Potato	mitochondrion	74.96	74.75
Solyc08g045850.2.1	Tomato	nucleus	74.53	74.11
KRH51622	Soybean	cytosol, plastid	73.24	73.13
CDY31603	Canola	plastid	68.35	71.64
KRH60945	Soybean	plastid	68.92	70.23
CDX71562	Canola	mitochondrion, plastid	70.36	69.96
Bra017881.1-P	Field mustard	plastid	70.36	69.86
AT5G42310.1	Thale cress	plastid	70.65	69.25
GSMUA_Achr9P12090_001	Banana	mitochondrion	62.01	62.65
HORVU2Hr1G043170.1	Barley	mitochondrion	53.09	55.82
EER99505	Sorghum	plastid	53.24	55.39
TraesCS2B01G238300.1	Wheat	plastid	53.24	55.31
Zm00001d021716_P001	Maize	plastid	52.37	54.49
Os07t0548300-01	Rice	plastid	47.48	51.16
VIT_16s0039g02560.t01	Wine grape	cytosol	28.78	40.82
VIT_13s0064g00400.t01	Wine grape	cytosol	15.25	21.41
VIT_07s0031g01360.t01	Wine grape	plastid	14.96	21.27
VIT_07s0005g06720.t01	Wine grape	cytosol	12.09	21.21
VIT_03s0091g00440.t01	Wine grape	plastid	22.16	18.99
VIT_12s0028g01140.t01	Wine grape	cytosol	14.96	18.98
VIT_01s0011g01970.t01	Wine grape	cytosol	15.83	18.9
VIT_11s0052g00600.t01	Wine grape	plastid	21.87	18.51
VIT_05s0020g00690.t01	Wine grape	plastid	13.24	18.47
VIT_17s0000g07500.t01	Wine grape	plastid	20.0	16.0
VIT_07s0005g01660.t01	Wine grape	plastid	19.86	15.92
VIT_08s0007g08590.t01	Wine grape	cytosol	19.28	15.73

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100263329	wikigene:100263329	MapMan:16.12.4.2	ProteinID:CBI40709	ProteinID:CBI40709.3
UniProt:D7UD94	EMBL:FN596759	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003727
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658
GO:GO:0009987	GO:GO:0010239	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0042644
GO:GO:0042651	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100263329
wikigene:LOC100263329	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF788	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGR:TC61752	TIGR:TC62703	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CD39C	ArrayExpress:VIT_18s0122g01380	EnsemblPlantsGene:VIT_18s0122g01380	EnsemblPlants:VIT_18s0122g01380.t01	unigene:Vvi.9590
RefSeq:XP_002272226	RefSeq:XP_002272226.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:961760..967044

Molecular Weight (calculated)

77748.9 Da

IEP (calculated)

6.315

GRAVY (calculated)

-0.245

Length

695 amino acids

Sequence
(BLAST)

001: MLLLPAPLPT RFPSYHFLSP VLRDHRILQP PLLATTSAAV TTASGEASQF SKPLNEYGSS GDLNSVPNRR YDFTPLLRFL SNSESDSDSG AEVESPPPTS
101: LDFTEFQLVE SYRAVPAPLW HSLLKSLCSD SSSIGTAYSL VTWLERHNLC FSYELLYSIL IHALGRSEKL YEAFLLSQRQ TLTPLTYNAL IGACARNDDL
201: EKALNLMSRM RRDGFPSDFV NYSFIIQSLT RTNKSDSSML QKIYAEIESD KIELDGQLLN DIIVGFAKSG DVNRAMSFLA MVQGNGLSPK TATLVAVITA
301: LGNAGRTEEA EAIFEELKEG GLMPRTRAYN ALLKGYVKTG SLKDAESIVS EMERSGFSPD EHTYSLLIDA YANAGRWESA RIVLKEMEAS GVRPNSYVFS
401: RILASYRDRG KWQKSFQVLR EMRNSGVSPD RHFYNVMIDT FGKCNCLDHA LATFDRMRME GVQPDAVTWN TLIDCHCKSG HHNKAEELFE AMQESGCSPC
501: TTTYNIMINS FGEQERWEDV KTLLGKMQSQ GLLANVVTYT TLVDIYGQSG RFKDAIECLE VMKSVGLKPS STMYNALINA YAQRGLSEQA INAFRVMRAD
601: GLKPSVLVLN SLINAFGEDR RDAEAFSVLQ YMKENDLKPD VVTYTTLMKA LIRVEKFDKV PAVYEEMTLS GCTPDRKARA MLRSALRYME RTLKS

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.