CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60945	Soybean	plastid	88.07	89.88
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	73.13	73.24
CDY31603	Canola	plastid	66.67	69.98
PGSC0003DMT400030453	Potato	mitochondrion	69.54	69.44
Solyc08g045850.2.1	Tomato	nucleus	69.54	69.24
AT5G42310.1	Thale cress	plastid	69.83	68.55
CDX71562	Canola	mitochondrion, plastid	68.68	68.38
Bra017881.1-P	Field mustard	plastid	68.68	68.29
GSMUA_Achr9P12090_001	Banana	mitochondrion	58.48	59.16
HORVU2Hr1G043170.1	Barley	mitochondrion	51.72	54.46
TraesCS2B01G238300.1	Wheat	plastid	52.16	54.26
EER99505	Sorghum	plastid	51.44	53.59
Zm00001d021716_P001	Maize	plastid	51.01	53.14
Os07t0548300-01	Rice	plastid	45.98	49.61
KRH27783	Soybean	cytosol, plastid	26.29	35.06
KRH77730	Soybean	plastid	25.86	34.42
KRH57931	Soybean	cytosol	4.31	28.04
KRH14115	Soybean	plastid	15.37	22.25
KRH12254	Soybean	plastid	25.14	21.11
KRH37281	Soybean	plastid	24.86	20.84
KRH02451	Soybean	plastid	14.08	20.08
KRH02371	Soybean	plastid	14.08	20.08
KRG91073	Soybean	plastid	22.7	19.9
KRH27571	Soybean	plastid	15.37	19.81
KRH59429	Soybean	plastid	14.22	19.68
KRH43291	Soybean	plastid	14.66	19.39
KRH37687	Soybean	plastid	13.51	19.38
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	17.1	19.04
KRG90623	Soybean	nucleus	15.37	19.04
KRH46714	Soybean	plastid	14.08	19.03
KRH36131	Soybean	plastid	15.09	18.99
KRH03384	Soybean	nucleus	19.68	15.95
KRH01436	Soybean	plastid	19.97	15.89
KRH45156	Soybean	plastid	19.68	15.6
KRH56998	Soybean	nucleus	19.11	15.5
KRH66918	Soybean	cytosol	18.53	15.41
KRG95241	Soybean	plastid	14.08	14.39

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100778551	MapMan:16.12.4.2	EMBL:ACUP02003382	EnsemblPlantsGene:GLYMA_06G018300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1K7D8	InterPro:IPR002885	InterPro:IPR011990	ProteinID:KRH51621.1	EnsemblPlants:KRH51622	ProteinID:KRH51622
ProteinID:KRH51622.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF788	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233A2F5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:1381907..1386631

Molecular Weight (calculated)

78397.8 Da

IEP (calculated)

7.320

GRAVY (calculated)

-0.296

Length

696 amino acids

Sequence
(BLAST)

001: MFLLPPQLTT APFPSISIHV THFHFPTTHH RHNHNHNHNH VLPPPQSTAN PITAKPIILE EGPDDILSFH NRRYDFTPLL TFLSNPSTTS DSDSNSTPPT
101: SLGSTEFQLA ESYRAVPAPL WHALLKSLCS SSSSIALAYA VVSWLQKHNL CFSYELLYSI LINALGRSEK LYEAFLLSQR QVLTPLTYNA LIGACARNGD
201: VEKALNLMSK MRRDGYQPDF VNYSSIIQYL TRSNKIDSPI LQKLYTEIET DKIEIDGHLM NDIILGFSKA GDPTRAMRFL AMAQSNGLNP KPSTLVAVIL
301: ALGNSGRTHE AEALFEEIRE NGSEPRTRAY NALLKGYVKT GSLKDAEFVV SEMEKAGVKP DEQTYSLLID AYAHAGRWES ARIVLKEMEA SNVEPNSYVY
401: SRILASYRDK GEWQKSFQVL KDMKSNGVQP DRHFYNVMID TFGKYNCLDH AMATFERMLS EGIRPDTVTW NTLINCHCKS GRHNMAEELF GEMQQRGYSP
501: CITTYNIMIN SMGEQQRWEQ VSLFLSKMQS QGLLPNSITY TTLVDVYGKS GRFSDAIECL EVLKSTGFKP TSTMYNALIN AYAQRGLSEL AVNAFRLMTT
601: EGLTPSLLAL NSLINAFGED RRDAEAFAVL QYMKENNIEP DVVTYTTLMK ALIRVEKFQK VPAVYEEMVT SGCTPDRKAR AMLRSALRYM KQTLKS

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.