CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31603	Canola	plastid	93.28	98.34
AT5G42310.1	Thale cress	plastid	90.99	89.7
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	69.96	70.36
KRH51622	Soybean	cytosol, plastid	68.38	68.68
PGSC0003DMT400030453	Potato	mitochondrion	67.1	67.29
Solyc08g045850.2.1	Tomato	nucleus	66.81	66.81
KRH60945	Soybean	plastid	64.66	66.28
GSMUA_Achr9P12090_001	Banana	mitochondrion	57.51	58.43
HORVU2Hr1G043170.1	Barley	mitochondrion	50.93	53.86
EER99505	Sorghum	plastid	50.93	53.29
TraesCS2B01G238300.1	Wheat	plastid	50.79	53.06
Zm00001d021716_P001	Maize	plastid	50.36	52.69
Os07t0548300-01	Rice	plastid	45.78	49.61
CDY64953	Canola	cytosol	17.17	41.24
CDX74617	Canola	mitochondrion	18.45	36.75
CDX78150	Canola	plastid	15.02	21.65
CDX73576	Canola	plastid	15.31	21.44
CDX71198	Canola	cytosol	17.02	21.02
CDY56509	Canola	plastid	22.6	19.32
CDY29249	Canola	plastid	22.46	19.22
CDY06027	Canola	plastid	14.59	19.21
CDY41990	Canola	plastid	12.88	19.11
CDY32056	Canola	plastid	21.89	18.91
CDY42639	Canola	plastid	13.02	18.84
CDX71917	Canola	plastid	14.59	18.72
CDY05264	Canola	plastid	13.02	18.57
CDY24692	Canola	plastid	12.59	18.33
CDX85360	Canola	plastid	13.16	18.22
CDY31666	Canola	cytosol	16.17	18.14
CDX86283	Canola	plastid	13.16	18.11
CDX84260	Canola	cytosol, nucleus, plastid	16.17	17.57
CDY19091	Canola	cytosol	18.03	17.28
CDY56616	Canola	plastid	19.03	16.86
CDX98345	Canola	cytosol	7.44	16.72
CDY15384	Canola	cytosol	10.16	16.67
CDY10802	Canola	plastid	20.17	16.61
CDX79920	Canola	cytosol, plastid	19.31	16.52
CDY23832	Canola	plastid	19.17	16.38
CDX73117	Canola	plastid	19.03	15.41
CDY45398	Canola	plastid	18.45	14.93
CDY52317	Canola	cytosol	0.29	11.76

Protein Annotations

EnsemblPlants:CDX71562	EnsemblPlantsGene:GSBRNA2T00148553001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF788
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX71562	ProteinID:CDX71562.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EE971F	MapMan:16.12.4.2	:	:

Description

BnaC04g17970D

Coordinates

chrLK031793:-:2880862..2883439

Molecular Weight (calculated)

78810.8 Da

IEP (calculated)

7.892

GRAVY (calculated)

-0.215

Length

699 amino acids

Sequence
(BLAST)

001: MLLMQPPLVS SRFHSLYFIP RHHHRLFQRP ISAFSATASC SPSSSSSYFS SWNGLDASEE EEDEFSTFVR RRYDFSPLLK FLSRFGPVEL VLDSVNLEPL
101: PVSLDPVEFE LAESYKAVPA PYWHSLLKSL CSSRPSLGLA YAVVSWLERH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY NALIGACARN
201: NDIDKALNLI SRMRQDGYQS DFVNYSLVIQ ALTRSNKIDS ALLQSLYREI KHDKLELDVQ LVNDLIMGFA KSGDPSRALQ LLGMAQSTGL SAKTATLVSI
301: ISALANSGRT LEAEALFEEL RQSGIKPRTK AYNALLRGYV KTGPLRDAES MVSEMEKSGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM EAGDVQPNSF
401: VFSRLLAGYR DRGEWQKTFQ VLKEMKSIGV KPDTQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAQQ MFEAMEKRGC
501: LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGVLPNVV THTTLVDVYG KSGRFNDAID CLEEMKSVGL KPSSTMYNAL INAYAQRGLS EQAVNAFRVM
601: TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV NPDVVTYTTL MKALIRVDKF QKVPGVYEEM IMSGCKPDRK ARSMLRSALR YMKQTLRAS

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.