CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86283	Canola	plastid	97.23	96.65
Bra037464.1-P	Field mustard	plastid	97.03	91.59
AT5G48730.1	Thale cress	plastid	88.91	88.39
VIT_07s0005g06720.t01	Wine grape	cytosol	60.0	76.52
Solyc01g006500.2.1	Tomato	plastid	66.34	68.65
PGSC0003DMT400082022	Potato	plastid	66.34	68.65
KRH46714	Soybean	plastid	65.35	64.08
GSMUA_Achr1P15160_001	Banana	plastid	61.98	63.75
Zm00001d037476_P001	Maize	plastid	58.02	59.55
EER87934	Sorghum	plastid	58.02	59.55
HORVU7Hr1G027800.8	Barley	cytosol	57.03	59.38
Os06t0172000-01	Rice	plastid	59.8	59.1
TraesCS7B01G033900.1	Wheat	plastid	58.42	58.19
TraesCS7A01G133100.1	Wheat	plastid	58.42	58.07
CDX78150	Canola	plastid	39.6	41.24
CDX73576	Canola	plastid	39.01	39.48
CDY24692	Canola	plastid	33.66	35.42
CDY05264	Canola	plastid	33.86	34.9
CDY41990	Canola	plastid	21.98	23.57
CDY42639	Canola	plastid	21.98	22.98
CDX71198	Canola	cytosol	19.8	17.67
CDY64953	Canola	cytosol	10.1	17.53
CDY06027	Canola	plastid	17.23	16.38
CDX71917	Canola	plastid	17.23	15.96
CDX98345	Canola	cytosol	9.7	15.76
CDX74617	Canola	mitochondrion	10.3	14.81
CDX84260	Canola	cytosol, nucleus, plastid	18.61	14.62
CDY31666	Canola	cytosol	17.82	14.45
CDY32056	Canola	plastid	22.57	14.09
CDY31603	Canola	plastid	18.22	13.88
CDY56509	Canola	plastid	21.98	13.57
CDY29249	Canola	plastid	21.78	13.46
CDX71562	Canola	mitochondrion, plastid	18.22	13.16
CDY15384	Canola	cytosol	11.09	13.15
CDY45398	Canola	plastid	20.4	11.92
CDX73117	Canola	plastid	20.2	11.82
CDY19091	Canola	cytosol	16.63	11.52
CDY56616	Canola	plastid	17.43	11.15
CDY10802	Canola	plastid	18.61	11.07
CDY23832	Canola	plastid	16.04	9.9
CDX79920	Canola	cytosol, plastid	15.45	9.55
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX85360	EnsemblPlantsGene:GSBRNA2T00143032001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF664
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX85360	ProteinID:CDX85360.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EEFB71	MapMan:35.1	:	:

Description

BnaC07g26710D

Coordinates

chrLK031841:+:1394681..1396375

Molecular Weight (calculated)

57759.3 Da

IEP (calculated)

9.627

GRAVY (calculated)

-0.319

Length

505 amino acids

Sequence
(BLAST)

001: MVSLSTSTSH AQPLPSAYNR RPAERKVTVR CVSFSPREPK HTSNDSSLAV RDTRPRKWVK STEERYSKEI QDEMNSKIAS RKAISIILRR EATKAIIEKK
101: KGPTNSKKLL PRTVLEALHE RITALRWESA LQVFELLREQ LWYKPNVGIY VKLIVMLGKC KQPEKAHRLF QEMIGEGCVV NHEVYTALLS AYSRSGRFDD
201: AFTLLELMKS SHNCHPDVHT YSILIKSFLQ VFAFDEVQAL LADMRRLGIR PNTITYNTLI DAYGKAKMFV EMESTLIQML GEDDCKPDSW TMNSTLRAFG
301: GNGQIEMMEN CYDKFQSSGI EPNIRTFNIL LDSYGKTGNY KKMSAVMEFM QKYHYSWTIV TYNVVIDAFG RAGDLKQMEY LFRLMQSERI KPSCVTLCSL
401: VRAYGRAGKA DKIGGVLRFI ENSDVRLDLV FFNCLVDAYG RMEKFAEMKG VLELMEKKGV KPDKITYRTM VKAYRISGMT SHVKELDGVV ESVGEAQVVL
501: KKPDF

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.