CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31666	Canola	cytosol	91.14	94.06
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	81.49	85.48
VIT_01s0011g01970.t01	Wine grape	cytosol	60.81	67.18
PGSC0003DMT400027006	Potato	cytosol, plastid	58.32	65.1
Os02t0170000-02	Rice	cytosol	45.1	61.83
GSMUA_Achr7P03530_001	Banana	cytosol	56.45	61.63
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	58.32	60.19
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	58.48	60.16
Zm00001d015377_P003	Maize	plastid	52.26	56.28
OQU84443	Sorghum	cytosol	52.41	55.7
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	49.3	49.15
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	40.12	43.51
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	41.21	42.26
TraesCS6A01G163600.2	Wheat	nucleus	40.9	41.68
CDY06027	Canola	plastid	16.8	20.34
CDX71198	Canola	cytosol	17.57	19.96
CDX78150	Canola	plastid	14.77	19.59
CDX71917	Canola	plastid	16.49	19.45
CDY24692	Canola	plastid	14.31	19.17
CDY41990	Canola	plastid	14.0	19.11
CDY64953	Canola	cytosol	8.55	18.9
CDY42639	Canola	plastid	14.15	18.84
CDX73576	Canola	plastid	14.62	18.84
CDY05264	Canola	plastid	14.31	18.78
CDX85360	Canola	plastid	14.62	18.61
CDX86283	Canola	plastid	14.62	18.5
CDY52317	Canola	cytosol	0.47	17.65
CDY31603	Canola	plastid	17.26	16.74
CDX74617	Canola	mitochondrion	8.86	16.24
CDX71562	Canola	mitochondrion, plastid	17.57	16.17
CDX98345	Canola	cytosol	7.62	15.76
CDY32056	Canola	plastid	19.6	15.57
CDY29249	Canola	plastid	19.28	15.18
CDY56509	Canola	plastid	19.13	15.04
CDY19091	Canola	cytosol	15.71	13.85
CDY45398	Canola	plastid	18.35	13.66
CDX73117	Canola	plastid	18.2	13.56
CDY23832	Canola	plastid	16.64	13.08
CDX79920	Canola	cytosol, plastid	16.49	12.97
CDY10802	Canola	plastid	16.33	12.37
CDY15384	Canola	cytosol	7.93	11.97
CDY56616	Canola	plastid	14.31	11.66

Protein Annotations

MapMan:1.1.8.1.6.1	Gene3D:1.25.40.10	EnsemblPlants:CDX84260	ProteinID:CDX84260	ProteinID:CDX84260.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00141341001	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF421	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDACFA	SEG:seg	:	:	:

Description

BnaC04g10220D

Coordinates

chrLK031836:+:1230023..1233124

Molecular Weight (calculated)

72961.5 Da

IEP (calculated)

8.721

GRAVY (calculated)

-0.264

Length

643 amino acids

Sequence
(BLAST)

001: MKMKVKTFTS PEPLLNGYSH PCDLLSSMNN NSRRRRVYIN IYKSTIPKLT TSLWLVAGNA LNCLFTDTSS FQRYLRFGVT HFNGGGVVKS CRKEGFVIDE
101: RGKLKRFNKK KLSRRRCGSL RGRGWKYGSG FVDGIFPVLS PIAQKILSFI QRETDPEKVA DVLGTLPSTH ASWDDLINVA VQLRLNKKWD PIFLVCEWIL
201: RRSSFQPDVI CFNLLIDAYG QKLRYKEAES LYVQLLESRC VPTEDTYALL VKAYCLAGLI EKAEAVLIEM QNHHVTPSAT VYNAYIEGLT KRKGNTEEAI
301: DVFQRMKRER CKPTTETYNL MINLYGKASK SYMSWKLFCE MRSHQCKPNI CTYTALVNAF AREGLCQKAE EVFEQLQEDG LEPDVYVYNA LMEAYSRAGY
401: PYGAAEIFSL MQHMGCEPDR ASYNIMVDAY GRAGLHSDAE AVFEQMKKLG ISPTMKSHML LLSAYSRARD VTKCESIVKE MSENGVEPDT FVLNSMLNLY
501: GRLGQFTKME KTLAEMEKGR CKADISTYNI LINVYGKAGY LERVEELFEE VKERKLTPDV VTWTSRMGGY SRKKLYVKCL EIFEEMIDSG CVPDGGTAKV
601: LLKACASEEQ VEQVTEVIRT MHKNVSVSSL VPKLVAKSLA VST

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.