CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015377_P003	Maize	plastid	89.09	90.28
Os02t0170000-02	Rice	cytosol	66.12	85.29
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	73.39	68.84
GSMUA_Achr7P03530_001	Banana	cytosol	62.31	64.01
VIT_01s0011g01970.t01	Wine grape	cytosol	60.17	62.54
PGSC0003DMT400027006	Potato	cytosol, plastid	57.02	59.9
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	57.52	58.68
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	58.51	56.64
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	58.68	56.62
TraesCS6A01G163600.2	Wheat	nucleus	59.01	56.58
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	57.36	55.7
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	55.7	54.98
CDY31666	Canola	cytosol	55.21	53.61
CDX84260	Canola	cytosol, nucleus, plastid	55.7	52.41
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	54.05	43.03
OQU77078	Sorghum	mitochondrion	16.86	20.65
KXG40345	Sorghum	plastid	15.04	18.72
EER87934	Sorghum	plastid	14.05	17.28
OQU86802	Sorghum	cytosol	8.76	17.15
EER97871	Sorghum	plastid	15.54	16.79
EER99505	Sorghum	plastid	18.51	16.77
KXG30749	Sorghum	plastid	13.72	16.67
EES13486	Sorghum	plastid	16.36	16.45
KXG36606	Sorghum	plastid	20.83	16.3
KXG20531	Sorghum	plastid	18.51	14.43
KXG36530	Sorghum	plastid	18.18	13.43
OQU90703	Sorghum	plastid	19.17	12.93
EES16159	Sorghum	plastid	16.69	11.58

Protein Annotations

MapMan:1.1.8.1.6.1	Gene3D:1.25.40.10	UniProt:A0A1Z5RL16	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU84443	ProteinID:OQU84443	ProteinID:OQU84443.1	PFAM:PF01535
PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF421	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3004G055600	SignalP:SignalP-noTM	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000B8B9D8F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:4492659..4495223

Molecular Weight (calculated)

67970.5 Da

IEP (calculated)

7.710

GRAVY (calculated)

-0.339

Length

605 amino acids

Sequence
(BLAST)

001: MNTLTWLCSS FCRLSVEAHT YYWIARPRWK LCACRNVLQE TALHDAEVNS YRHSERKNRK RDGAYIDKDG VARTFDRKKI SRKRGGAIKG RGWKYGSGFV
101: DGVFPVLSPM AQDILEFVQK GTDVTNIWES LDKIPQAHDL WDDIVNVAVQ LRLNRQWEPI ITVCEWILYR SSFRPDIICY NLLIDAYGQK RQLNKAESIY
201: MALLEAHCVP TEDTYALLLR AYCNSGQLHR AEGVISEMQK NGLPPTATVY NAYLDGLLKA RCSEKAVEVY QRMKKERCRT NTETYTLMIN VYGKAKQPMS
301: SLKVFNEMKT IGCKPNICTY TALVNAFARE GLCEKAEEVF EEMQQAGHEP DVYAYNALME AYSRAGLPQG ASEIFSLMEH MGCEPDRASY NILVDAYGRA
401: GLHQEAEAAF QELKQQGMRP TMKSHMLLLS AHAKSGNVAR CEEVMAQLHK SGLRPDTFAL NAMLNAYGRA GRLDDMERLL GAMERGGDDD AGGGAAPDTS
501: TYNVLVNVYG RAGYLDRMEA AFRALAARGL AADVVTWTSR IGAYARKKEY GRCLEIFEEM VDAGCYPDAG TAKVLLAACS DERQVEQVTA IVRSMHKDAK
601: TLFAL

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.