Factsheet for HORVU6Hr1G032270.20

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0170000-02	Rice	cytosol	56.9	78.25
Zm00001d015377_P003	Maize	plastid	68.53	74.04
OQU84443	Sorghum	cytosol	68.84	73.39
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	56.12	61.05
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	58.91	60.61
TraesCS6A01G163600.2	Wheat	nucleus	59.07	60.38
GSMUA_Achr7P03530_001	Banana	cytosol	53.33	58.4
VIT_01s0011g01970.t01	Wine grape	cytosol	51.63	57.22
PGSC0003DMT400027006	Potato	cytosol, plastid	49.46	55.38
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	48.99	51.55
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	49.92	51.52
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	49.3	51.04
CDY31666	Canola	cytosol	48.53	50.24
CDX84260	Canola	cytosol, nucleus, plastid	49.15	49.3
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	47.44	40.26
HORVU2Hr1G035060.2	Barley	cytosol	17.83	18.4
HORVU0Hr1G007320.4	Barley	cytosol	13.02	18.22
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	14.26	18.04
HORVU7Hr1G027800.8	Barley	cytosol	12.87	17.11
HORVU4Hr1G086600.3	Barley	plastid	13.02	16.94
HORVU2Hr1G043170.1	Barley	mitochondrion	16.9	16.49
HORVU3Hr1G114340.4	Barley	mitochondrion	15.97	16.25
HORVU6Hr1G075250.5	Barley	plastid	11.16	14.4
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	12.4	13.84
HORVU7Hr1G111000.5	Barley	plastid	16.9	13.36
HORVU5Hr1G114630.1	Barley	mitochondrion	17.21	13.33
HORVU2Hr1G056820.1	Barley	plastid	15.81	12.45
HORVU5Hr1G022350.1	Barley	plastid	8.99	11.28

Protein Annotations

EnsemblPlants:HORVU6Hr1G032270.20	EnsemblPlantsGene:HORVU6Hr1G032270	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF421
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0002963BE5	UniProt:M0WYL3	MapMan:1.1.8.1.6.1	:	:	:

Description

Predicted protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0WYL3]

Coordinates

chrchr6H:-:140840414..140843618

Molecular Weight (calculated)

71997.3 Da

IEP (calculated)

7.927

GRAVY (calculated)

-0.394

Length

645 amino acids

Sequence
(BLAST)

001: MLRIQAPLHY HPMNAGPRKW RICACGNIHQ GTSSLRDAEA NGHRHGERKG KRKHEGAYID KDGEAQTFDR KKISRKRGGA MRGRGWKYGS GFVDGVFPVL
101: SPMAQDILEL VQKGTDVAKV WESLDNVPPT HALWDDVLNV AVQLRLNRQW DQVISVCEWI VHRSSFRPDV VCYNLLIDAY GRRRLLGKAE AMYAALLEAR
201: CVPTEDTYAL LLRAYCTAGS LHRAEGVISE MREHGIPPSK KASFRLGWSL TDLLTVTING GVFCRRDGVQ RVPRRAAQGE VRREGGGGVP EDEEGAVPDQ
301: HGDVHPHDQR LREGTNFFPM ENFSSPEMED NNLLLVWLCG RQSKQPMSAM KVFKEMQSIG CKANICTYTA LVNAFAREGL CEKAEEVFEE MQQAGHEPDV
401: YAYNALMEAY SRAGFPQAAS EIFSLMQHMG CEPDRASYNI LVDAYGRAGL HREAEAVFES LKRQGMAPTM KSHMLLLAAH ARSGNVARCE EVMAQLHKSG
501: LAPDTIALNA MLNAYGRAGR LDDMERLLAA MERRGTRDVG TYNVAVNAYG RAGYLERMEA AFASLERRGL AADVVTWTSR MGAYARKKEY RRCLEIFEEM
601: VDAGCYPDAG TAKVLVAACS DERQVEQVTA IVRSMHKEAK TLFTI

Best Arabidopsis Sequence Match ( AT2G35130.1 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPKTIGVTV YNAYIEGLMK RKGNTEEAID VFQRMKRDRC KPTTETYNLM INLYGKASKS YMSWKLYCEM RSHQCKPNIC
301: TYTALVNAFA REGLCEKAEE IFEQLQEDGL EPDVYVYNAL MESYSRAGYP YGAAEIFSLM QHMGCEPDRA SYNIMVDAYG RAGLHSDAEA VFEEMKRLGI
401: APTMKSHMLL LSAYSKARDV TKCEAIVKEM SENGVEPDTF VLNSMLNLYG RLGQFTKMEK ILAEMENGPC TADISTYNIL INIYGKAGFL ERIEELFVEL
501: KEKNFRPDVV TWTSRIGAYS RKKLYVKCLE VFEEMIDSGC APDGGTAKVL LSACSSEEQV EQVTSVLRTM HKGVTVSSLV PKLMAKSLTV N

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.