Factsheet for TraesCS6D01G147800.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	93.59	88.52
TraesCS6A01G163600.2	Wheat	nucleus	88.7	83.36
OQU84443	Sorghum	cytosol	58.68	57.52
Zm00001d015377_P003	Maize	plastid	57.84	57.45
Os02t0170000-02	Rice	cytosol	44.86	56.72
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	61.05	56.12
VIT_01s0011g01970.t01	Wine grape	cytosol	45.03	45.88
GSMUA_Achr7P03530_001	Banana	cytosol	44.01	44.31
PGSC0003DMT400027006	Potato	cytosol, plastid	42.83	44.1
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	43.84	41.6
CDY31666	Canola	cytosol	43.68	41.57
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	42.5	41.11
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	42.83	40.77
CDX84260	Canola	cytosol, nucleus, plastid	43.51	40.12
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	44.01	34.34
TraesCS7D01G400900.3	Wheat	cytosol	14.17	16.18
TraesCS3D01G529200.1	Wheat	plastid	15.85	15.38
TraesCS4D01G353200.2	Wheat	cytosol	11.8	14.43
TraesCS2D01G193100.1	Wheat	plastid	17.71	13.24
TraesCS4D01G132900.3	Wheat	plastid	11.3	12.38
TraesCS7D01G482800.1	Wheat	plastid	16.69	12.16
TraesCS6D01G282900.1	Wheat	plastid	9.78	10.74
TraesCS2D01G244500.3	Wheat	plastid	15.01	10.62
TraesCS5D01G097800.1	Wheat	plastid	15.18	10.51
TraesCS5D01G500300.1	Wheat	plastid	15.35	10.46

Protein Annotations

EnsemblPlants:TraesCS6D01G147800.2	EnsemblPlantsGene:TraesCS6D01G147800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF421	PFAM:PF13041	PFAM:PF17177	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:1.1.8.1.6.1	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:120667702..120669971

Molecular Weight (calculated)

65569.5 Da

IEP (calculated)

10.626

GRAVY (calculated)

-0.641

Length

593 amino acids

Sequence
(BLAST)

001: MTAGPRWRIC ACGNIQQGTS SLHDAEANSS RYGERKNRKH PGAYIDKDGE ARTFDRKKIS RKRGGAMRGR GWKYGSGFVD GVFPVLSPMA QDILELVQKG
101: TDTAKVWQAL DNVPPTHALW DDVLNVAVQL RLSRQWDPII SVCEWIVHRS SFRPDVVCYN LLIDAYGRTR RLGKAEAMYA ALLEARCVPT EDTYALLLRA
201: YCAAGSLHRA EGVISEMREH GIPPSATVYN AYLDGLLKAR CAEKAVEVYQ RMKRERCRTN TETYTLMINV YGKSKQPMSA MKVFKEMQSL GCKANICTYT
301: ALVNAFAREG LCEKAEEVFE EMQQAGHEPD VYAYNALMEA YSRAGFPQAA AEIFSLMQHM GCEPDRASYN ILVDAYGRSG LHRVSDGRRG GGRVRVAEAA
401: GDGADDEVAH AAAGGARQVR QRGAVRGGDG AAAQVRPRPG HLRAQRHAQR LRPRRPPRRH GAAPRRHGAP GDARRGHVQR GRQRLRPRRV PGEDGGGVRV
501: AGGEGPRRRR GHVDVPHGRL LQEEGVPEVP GDLRGDGGRR VLPGRRDRQG ARRRLLRRAA GGAGHGHRQV HAQGGQNLVH HMTKMKTNLV LIS

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.