Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G178100.5 | Wheat | plastid | 99.08 | 99.08 |
| TraesCS4B01G138200.1 | Wheat | cytosol, mitochondrion, plastid | 95.38 | 97.91 |
| HORVU4Hr1G024360.2 | Barley | endoplasmic reticulum, vacuole | 96.67 | 90.48 |
| Os03t0309800-02 | Rice | plastid | 72.27 | 78.04 |
| EER97871 | Sorghum | plastid | 71.16 | 68.75 |
| Zm00001d018693_P001 | Maize | plastid | 69.87 | 66.2 |
| CDY24692 | Canola | plastid | 53.79 | 60.62 |
| KRH02451 | Soybean | plastid | 54.53 | 60.45 |
| KRH02371 | Soybean | plastid | 54.34 | 60.25 |
| VIT_05s0020g00690.t01 | Wine grape | plastid | 54.9 | 59.64 |
| AT3G06430.1 | Thale cress | plastid | 53.42 | 59.47 |
| GSMUA_Achr11P... | Banana | plastid | 59.52 | 59.3 |
| CDY05264 | Canola | plastid | 53.6 | 59.18 |
| Bra020748.1-P | Field mustard | plastid | 53.6 | 59.06 |
| Solyc12g098990.1.1 | Tomato | plastid | 52.31 | 57.17 |
| PGSC0003DMT400011734 | Potato | plastid | 52.13 | 56.97 |
| Solyc01g057200.2.1 | Tomato | plastid | 48.06 | 55.32 |
| PGSC0003DMT400022191 | Potato | plastid | 50.65 | 54.69 |
| KRH37687 | Soybean | plastid | 44.18 | 49.28 |
| TraesCS4D01G353200.2 | Wheat | cytosol | 29.94 | 33.4 |
| TraesCS6D01G282900.1 | Wheat | plastid | 20.15 | 20.19 |
| TraesCS7D01G400900.3 | Wheat | cytosol | 14.23 | 14.84 |
| TraesCS3D01G529200.1 | Wheat | plastid | 16.45 | 14.57 |
| TraesCS2D01G193100.1 | Wheat | plastid | 19.78 | 13.49 |
| TraesCS7D01G482800.1 | Wheat | plastid | 19.59 | 13.02 |
| TraesCS5D01G500300.1 | Wheat | plastid | 18.48 | 11.49 |
| TraesCS6D01G147800.2 | Wheat | cytosol, mitochondrion | 12.38 | 11.3 |
| TraesCS5D01G097800.1 | Wheat | plastid | 17.56 | 11.1 |
| TraesCS2D01G244500.3 | Wheat | plastid | 15.9 | 10.26 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009553 | GO:GO:0009555 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009856 | GO:GO:0019843 | GO:GO:0048868 |
| InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF301 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS4D01G132900 | EnsemblPlants:TraesCS4D01G132900.3 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:119748608..119751689
Molecular Weight (calculated)
60857.0 Da
IEP (calculated)
8.506
GRAVY (calculated)
-0.465
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAFASALPA NSTSMALAGA ANATFRPRLV TAAADTSDTN TRRRHWKAGE FPFPTTSPSS GAQQRRRPRT TERPPPPPPS KGEDPEGRGR QRHWKAGEDP
101: EGGGRQRHWR AGEFPAAAES QSQSGRRGRA RTPIKNVQKR LDARADAKAW ACTVTEALAD RIAAKNWREA LQVFEMLKEQ TFYYPKEGTY MKLLLLLGRS
201: GQPSLAQHLF TEMQQQGCQP TPELYTALIG AYCRNGLLDE ALKLLEDMKA APLCQPDVYT YSILIKAFVD ASRFDLVDAM YKEMAERSVT PNTVTQNIVL
301: SGYCRAGRLD DMEKLLSAML ESANCKPDVW TMNIILSLFG NSGQVELMEK WYEKFRGYGI EPETRTFNIL IGAYGKKRMY DKMSAVMEYM RRLAFPWTTA
401: TYNNVIEAFA EAGDAKNMED TFNQMRSEGM KPDTKTFCCL INGFSNAALF HKVVGMVKLA ERLDVPANTS FHNSVLAACA KAEDLMEMER VFRHMKHMQC
501: EPDAITYSIL LEAYRKEGMF DKMYALQQEN PSLVSTELVM V
101: EGGGRQRHWR AGEFPAAAES QSQSGRRGRA RTPIKNVQKR LDARADAKAW ACTVTEALAD RIAAKNWREA LQVFEMLKEQ TFYYPKEGTY MKLLLLLGRS
201: GQPSLAQHLF TEMQQQGCQP TPELYTALIG AYCRNGLLDE ALKLLEDMKA APLCQPDVYT YSILIKAFVD ASRFDLVDAM YKEMAERSVT PNTVTQNIVL
301: SGYCRAGRLD DMEKLLSAML ESANCKPDVW TMNIILSLFG NSGQVELMEK WYEKFRGYGI EPETRTFNIL IGAYGKKRMY DKMSAVMEYM RRLAFPWTTA
401: TYNNVIEAFA EAGDAKNMED TFNQMRSEGM KPDTKTFCCL INGFSNAALF HKVVGMVKLA ERLDVPANTS FHNSVLAACA KAEDLMEMER VFRHMKHMQC
501: EPDAITYSIL LEAYRKEGMF DKMYALQQEN PSLVSTELVM V
001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG
Arabidopsis Description
EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.