Factsheet for Solyc01g057200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073910.2.1
Solyc02g082100.2.1
Solyc02g092930.1.1
Solyc03g063280.2.1
Solyc03g115770.2.1
Solyc03g122030.1.1
Solyc06g069690.2.1
Solyc07g066200.2.1
Solyc08g078700.2.1
Solyc10g005220.2.1
Solyc10g080540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT3G06430.1	Solyc10g005220.2.1	AT1G30860.1	21798944
AT3G06430.1	Solyc02g092930.1.1	AT2G23290.1	21798944
AT3G06430.1	Solyc03g122030.1.1	AT3G14180.1	21798944
AT3G06430.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT3G06430.1	Solyc01g073910.2.1	AT5G06710.1	21798944
AT3G06430.1	Solyc10g080540.1.1	AT5G06710.1	21798944
AT3G06430.1	Solyc03g063280.2.1	AT5G06780.1	21798944
AT3G06430.1	Solyc07g066200.2.1	AT5G56250.1	21798944
AT3G06430.1	Solyc03g115770.2.1	AT5G61380.1	21798944
AT3G06430.1	Solyc06g069690.2.1	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022191	Potato	plastid	91.91	86.23
Solyc12g098990.1.1	Tomato	plastid	73.19	69.49
VIT_05s0020g00690.t01	Wine grape	plastid	67.02	63.25
KRH02451	Soybean	plastid	62.13	59.84
CDY24692	Canola	plastid	60.85	59.58
KRH02371	Soybean	plastid	61.7	59.43
Bra020748.1-P	Field mustard	plastid	61.06	58.45
CDY05264	Canola	plastid	60.85	58.37
AT3G06430.1	Thale cress	plastid	59.79	57.82
Os03t0309800-02	Rice	plastid	57.02	53.49
GSMUA_Achr11P...	Banana	plastid	60.85	52.67
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	55.74	49.72
TraesCS4A01G178100.5	Wheat	plastid	55.53	48.24
TraesCS4D01G132900.3	Wheat	plastid	55.32	48.06
KRH37687	Soybean	plastid	49.36	47.84
EER97871	Sorghum	plastid	55.74	46.79
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	56.38	45.85
Zm00001d018693_P001	Maize	plastid	54.68	45.01
Solyc01g006500.2.1	Tomato	plastid	37.23	35.86
Solyc08g045780.2.1	Tomato	cytosol	33.83	34.57
Solyc04g054270.2.1	Tomato	plastid	20.0	19.67
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	19.79	14.93
Solyc07g043600.2.1	Tomato	nucleus	16.6	13.45
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	10.64	13.12
Solyc01g107320.2.1	Tomato	plastid	21.91	12.58
Solyc08g045850.2.1	Tomato	nucleus	17.87	12.02
Solyc07g017760.1.1	Tomato	plastid	20.21	11.28
Solyc03g113630.2.1	Tomato	nucleus	17.45	9.53
Solyc06g009520.2.1	Tomato	nucleus, plastid	16.81	9.39
Solyc04g015950.1.1	Tomato	plastid	15.32	8.47

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4AVT3	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF301	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc01g057200.2	EnsemblPlants:Solyc01g057200.2.1	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002761B14	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:59704955..59707031

Molecular Weight (calculated)

53304.3 Da

IEP (calculated)

8.133

GRAVY (calculated)

-0.366

Length

470 amino acids

Sequence
(BLAST)

001: MTSGSFTLSS SSSLFPSPTS IGGCRSIITG VGLYRLCSAV AATTSSSRIA FERKKHWKEG EYPGFSEVSV SHLNNKKGRR TPINKKIDRK NTANPWVNTV
101: PEALSDCIDK KQWQQALQVF EMLKKQPLYQ PKEGTYMRLL VLLGRCGQTG QAQQLFDSMI EEGLKPTPEL YTALIGAYCR SNILDKAFSL LNAMIDLPHC
201: QPDVYTYSIL IKACVDASRF DLVESLYEQM ADRSIVPNTV TQNIVLSGYG RAGKYAEMEK VLVGMLESAD SKPDVWTMNT ILSIFCNKGL IEMMERWYEK
301: FCNFGIEPET RTFNILIGAY GKRKMYDKMS SVMEYMRKLS FPWTTSTYNN VIEAFSDAGE AKHMEYTFDQ MRAEGMKADT KTFCCLVRGY ANAGLFHKAE
401: DVMEMGRVFK RMKDKQCQPD LMTYSTMIDA YQKEGMTDKV YDLEQEKLLK VAIHSNGSHN DEKKLELLPT

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.