Factsheet for AT3G06430.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24692	Canola	plastid	88.48	89.58
CDY05264	Canola	plastid	89.71	88.98
Bra020748.1-P	Field mustard	plastid	89.51	88.59
VIT_05s0020g00690.t01	Wine grape	plastid	74.49	72.69
KRH02371	Soybean	plastid	70.99	70.7
KRH02451	Soybean	plastid	70.99	70.7
PGSC0003DMT400011734	Potato	plastid	65.02	63.84
Solyc12g098990.1.1	Tomato	plastid	64.61	63.43
PGSC0003DMT400022191	Potato	plastid	62.96	61.08
GSMUA_Achr11P...	Banana	plastid	67.9	60.77
Solyc01g057200.2.1	Tomato	plastid	57.82	59.79
Os03t0309800-02	Rice	plastid	60.08	58.28
KRH37687	Soybean	plastid	55.76	55.88
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	58.02	53.51
TraesCS4A01G178100.5	Wheat	plastid	59.47	53.42
TraesCS4D01G132900.3	Wheat	plastid	59.47	53.42
EER97871	Sorghum	plastid	61.52	53.39
Zm00001d018693_P001	Maize	plastid	59.88	50.96
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	58.64	49.31
AT5G48730.1	Thale cress	plastid	35.39	33.86
AT3G53170.2	Thale cress	plastid	34.57	33.67
AT4G39620.1	Thale cress	plastid	23.05	19.89
AT5G36300.2	Thale cress	cytosol	9.47	13.94
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	17.49	13.87
AT3G59040.2	Thale cress	endoplasmic reticulum	16.67	13.73
AT5G42310.1	Thale cress	plastid	18.93	12.98
AT5G02860.2	Thale cress	plastid	21.81	12.94
AT2G18940.1	Thale cress	plastid	20.37	12.04
AT1G74850.1	Thale cress	plastid	18.11	10.21
AT2G41720.1	Thale cress	cytosol, plastid	17.08	10.1
AT2G31400.1	Thale cress	plastid	16.87	8.93

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:819817	UniProt:A0A178VD72	ProteinID:AAF08573.1	ProteinID:AEE74391.1
ArrayExpress:AT3G06430	EnsemblPlantsGene:AT3G06430	RefSeq:AT3G06430	TAIR:AT3G06430	RefSeq:AT3G06430-TAIR-G	EnsemblPlants:AT3G06430.1
TAIR:AT3G06430.1	EMBL:AY099616	Unigene:At.40524	EMBL:BT006618	Symbol:EMB2750	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507
GO:GO:0009536	GO:GO:0009553	GO:GO:0009555	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009856	GO:GO:0009987	GO:GO:0016787	GO:GO:0019843	GO:GO:0048868	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	RefSeq:NP_187294.1	ProteinID:OAP04250.1	PFAM:PF01535	PFAM:PF13041
PO:PO:0000293	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF301	InterPro:Pentatricopeptide_repeat	UniProt:Q9SQU6
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00000502BA	SEG:seg	:	:

Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]

Coordinates

chr3:-:1956409..1958304

Molecular Weight (calculated)

55702.4 Da

IEP (calculated)

7.843

GRAVY (calculated)

-0.352

Length

486 amino acids

Sequence
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.