Factsheet for GSMUA_Achr11P14370_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P14130_001
GSMUA_Achr2P04570_001
GSMUA_Achr2P08850_001
GSMUA_Achr3P05880_001
GSMUA_Achr3P07740_001
GSMUA_Achr3P10940_001
GSMUA_Achr3P25470_001
GSMUA_Achr4P01620_001
GSMUA_Achr4P21250_001
GSMUA_Achr4P22610_001
GSMUA_Achr4P33210_001
GSMUA_Achr5P04160_001
GSMUA_Achr6P22030_001
GSMUA_Achr7P00390_001
GSMUA_Achr7P02380_001
GSMUA_Achr7P20270_001
GSMUA_Achr8P20380_001
GSMUA_Achr8P22800_001
GSMUA_Achr8P23650_001
GSMUA_Achr9P12690_001
GSMUA_Achr9P14340_001
GSMUA_Achr9P15710_001
GSMUA_Achr9P19550_001
GSMUA_Achr9P25720_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	GSMUA_Achr4P33210_001	AT1G30860.1	21798944
AT3G06430.1	GSMUA_Achr7P00390_001	AT1G30860.1	21798944
AT3G06430.1	GSMUA_Achr3P05880_001	AT3G14180.1	21798944
AT3G06430.1	GSMUA_Achr8P23650_001	AT3G14180.1	21798944
AT3G06430.1	GSMUA_Achr9P14340_001	AT3G14180.1	21798944
AT3G06430.1	GSMUA_Achr1P14130_001	AT3G22550.1	21798944
AT3G06430.1	GSMUA_Achr2P08850_001	AT3G22550.1	21798944
AT3G06430.1	GSMUA_Achr3P25470_001	AT3G22550.1	21798944
AT3G06430.1	GSMUA_Achr4P21250_001	AT3G22550.1	21798944
AT3G06430.1	GSMUA_Achr4P22610_001	AT3G22550.1	21798944
AT3G06430.1	GSMUA_Achr6P22030_001	AT3G22550.1	21798944
AT3G06430.1	GSMUA_Achr8P20380_001	AT3G22550.1	21798944
AT3G06430.1	GSMUA_Achr9P25720_001	AT3G22550.1	21798944
AT3G06430.1	GSMUA_Achr10P...	AT4G25200.1	21798944
AT3G06430.1	GSMUA_Achr3P07740_001	AT5G06710.1	21798944
AT3G06430.1	GSMUA_Achr7P02380_001	AT5G06710.1	21798944
AT3G06430.1	GSMUA_Achr8P22800_001	AT5G06710.1	21798944
AT3G06430.1	GSMUA_Achr9P15710_001	AT5G06710.1	21798944
AT3G06430.1	GSMUA_Achr11P...	AT5G06780.1	21798944
AT3G06430.1	GSMUA_Achr10P...	AT5G56250.1	21798944
AT3G06430.1	GSMUA_Achr10P...	AT5G56250.1	21798944
AT3G06430.1	GSMUA_Achr3P10940_001	AT5G56250.1	21798944
AT3G06430.1	GSMUA_Achr4P01620_001	AT5G56250.1	21798944
AT3G06430.1	GSMUA_Achr5P04160_001	AT5G56250.1	21798944
AT3G06430.1	GSMUA_Achr7P20270_001	AT5G56250.1	21798944
AT3G06430.1	GSMUA_Achr9P12690_001	AT5G56250.1	21798944
AT3G06430.1	GSMUA_Achr10P...	AT5G61380.1	21798944
AT3G06430.1	GSMUA_Achr2P04570_001	AT5G61380.1	21798944
AT3G06430.1	GSMUA_Achr9P19550_001	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g00690.t01	Wine grape	plastid	64.27	70.08
CDY24692	Canola	plastid	60.96	68.96
AT3G06430.1	Thale cress	plastid	60.77	67.9
Bra020748.1-P	Field mustard	plastid	61.33	67.82
CDY05264	Canola	plastid	60.96	67.55
KRH02371	Soybean	plastid	59.48	66.19
KRH02451	Soybean	plastid	59.48	66.19
Os03t0309800-02	Rice	plastid	59.12	64.07
PGSC0003DMT400011734	Potato	plastid	57.83	63.43
Solyc12g098990.1.1	Tomato	plastid	57.46	63.03
PGSC0003DMT400022191	Potato	plastid	56.17	60.88
Solyc01g057200.2.1	Tomato	plastid	52.67	60.85
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	58.75	60.53
TraesCS4A01G178100.5	Wheat	plastid	59.3	59.52
TraesCS4D01G132900.3	Wheat	plastid	59.3	59.52
EER97871	Sorghum	plastid	59.85	58.04
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	59.12	55.54
Zm00001d018693_P001	Maize	plastid	58.2	55.34
KRH37687	Soybean	plastid	48.62	54.43
GSMUA_Achr1P15160_001	Banana	plastid	35.54	39.31
GSMUA_Achr11P...	Banana	endoplasmic reticulum	33.7	26.99
GSMUA_Achr5P22880_001	Banana	plastid	20.26	21.57
GSMUA_Achr1P10690_001	Banana	cytosol	11.79	19.34
GSMUA_Achr6P16830_001	Banana	cytosol	17.86	17.26
GSMUA_Achr7P03530_001	Banana	cytosol	16.57	15.28
GSMUA_Achr1P18290_001	Banana	cytosol	16.57	13.55
GSMUA_Achr9P12090_001	Banana	mitochondrion	16.76	13.23
GSMUA_Achr2P04910_001	Banana	plastid	20.07	13.09
GSMUA_Achr2P02090_001	Banana	cytosol	15.29	12.77
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	16.02	10.38
GSMUA_Achr8P07220_001	Banana	cytosol	17.31	8.64

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009553	GO:GO:0009555
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009856	GO:GO:0019843	GO:GO:0048868
EnsemblPlantsGene:GSMUA_Achr11G14370_001	EnsemblPlants:GSMUA_Achr11P14370_001	EnsemblPlants:GSMUA_Achr11T14370_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0RS67
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF301	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296B50C	SEG:seg	:	:

Description

Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G14370_001]

Coordinates

chr11:-:15388012..15391135

Molecular Weight (calculated)

60818.5 Da

IEP (calculated)

8.748

GRAVY (calculated)

-0.253

Length

543 amino acids

Sequence
(BLAST)

001: MVALSSSFLS SSPLTAPVLH LGSRFDVTRT AATKTAVDDA GGFARVLRCA VGPRPRKASG APRPPTTTRS TATSPRFRST PKRAPVAAAP AAGAPPKKRH
101: WKEGEFPGIS ESSVSRRPRT PIKNLKKKAD DRATAKAWAC TVTEALADRI QKKQWQEALE VFDMLKEQSF YSPKEGTYMK LLLLLGKSGQ PIQVQKLFNT
201: MEEEGCQPTS ELYTALLAAY CRSNLLDEAF SVLVKMKTLP HCQPDVYTYS TLIKACVEAS RFDLVDSLYQ DMSEHLITPN TVTQNIVLSG YGKAGKFDEM
301: EKVLSGMLES TTCKPDVWTM NIILSLFGNV GQVDMMEKWY EKFRSFGIEP ETRTFNILIG AYGKRRMYDK MTSVMEYMRK LAFPWTTSTY NNVIEAFADV
401: GDAKNMEYAF NQMRAEGMKA DTKTFCCLLN GFSIAGLFHK VVSTVQLAER LEVPTNTSFY NAVISACAKA GDLLEMERVF KHMNERHCAP DTVTYHILVE
501: AYRKEGMTDK IYDLKQENPG MVELELFSDG LICVLFYIRI RCS

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.