Factsheet for GSMUA_Achr1P18290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g07500.t01	Wine grape	plastid	67.02	51.21
KRH03384	Soybean	nucleus	65.51	50.64
KRH56998	Soybean	nucleus	64.91	50.23
PGSC0003DMT400063174	Potato	plastid	64.76	50.0
Solyc03g113630.2.1	Tomato	nucleus	64.16	49.53
CDX73117	Canola	plastid	62.95	48.44
AT1G74850.1	Thale cress	plastid	62.8	48.38
HORVU5Hr1G114630.1	Barley	mitochondrion	60.54	48.26
CDY45398	Canola	plastid	62.65	48.15
Bra015889.1-P	Field mustard	plastid	62.5	48.03
Os03t0824100-01	Rice	plastid	60.69	46.43
TraesCS5A01G486300.1	Wheat	plastid	60.24	46.03
TraesCS5D01G500300.1	Wheat	plastid	60.24	45.98
TraesCS5B01G500100.1	Wheat	plastid	59.94	45.28
Zm00001d022599_P002	Maize	plastid	60.69	45.08
OQU90703	Sorghum	plastid	60.69	44.93
GSMUA_Achr6P16830_001	Banana	cytosol	20.18	23.84
GSMUA_Achr2P02090_001	Banana	cytosol	23.04	23.54
GSMUA_Achr1P10690_001	Banana	cytosol	10.24	20.54
GSMUA_Achr1P15160_001	Banana	plastid	13.86	18.74
GSMUA_Achr7P03530_001	Banana	cytosol	16.42	18.51
GSMUA_Achr5P22880_001	Banana	plastid	13.55	17.65
GSMUA_Achr11P...	Banana	plastid	13.55	16.57
GSMUA_Achr2P04910_001	Banana	plastid	20.18	16.09
GSMUA_Achr9P12090_001	Banana	mitochondrion	15.51	14.97
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	18.67	14.8
GSMUA_Achr11P...	Banana	endoplasmic reticulum	12.2	11.95
GSMUA_Achr8P07220_001	Banana	cytosol	14.61	8.92

Protein Annotations

Gene3D:1.25.40.10	MapMan:15.6.1.2.2.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508	GO:GO:0009536	GO:GO:0009987
GO:GO:0042793	GO:GO:0045893	EnsemblPlantsGene:GSMUA_Achr1G18290_001	EnsemblPlants:GSMUA_Achr1P18290_001	EnsemblPlants:GSMUA_Achr1T18290_001	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	UniProt:M0S0Y7	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat	SMART:SM00463
SUPFAM:SSF48452	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294DC88	SEG:seg

Description

Putative Pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G18290_001]

Coordinates

chr1:-:13648320..13651972

Molecular Weight (calculated)

73337.2 Da

IEP (calculated)

4.613

GRAVY (calculated)

-0.166

Length

664 amino acids

Sequence
(BLAST)

001: MKDDRVAPTS LTYNTVINAC ARGGLPWDSL LGLFAEMRHD GIRPDLVTYN TLLAAAGARG LADEAEMVLR TMLEAGVLPD NATHTYLVDT FAKLGQLDRV
101: SELLLEMEAS GHLPDAVAYN VLMEAYAKAG ATKEAMGVLR QMQAAACTPT AATYSILLNL YGRSGQYEDV RDLFLEMKVG NTAPDASTYN ILISVFGEGG
201: YFKEVITLFH DMVEENVEPN METYEGLMFA CGKGGLHQEA KAVLSHMNQK GIVPSSKAYT GVVEAYGQAA LYEEAFVAFN TMHEIGSIAT VETYNSLLYT
301: FARGGLFKEA QAILARMDGA GVQRVDDTFN ALIDAYCQGG QFEDALKAYV EMQKSKCKPN EWTLEGILNV YCIAGLVDES KEQFQEIQSL GVMPSVVAYC
401: MLLGIYAKND RWDEAYQLLE EMKTNRVSNT HQVIASMIKG EYDDESNWQM VEYVFDKYNS EGCGYGLRLY NALLEALWWL GQKERGARVL NEATKRGLFP
501: ELYRQSNLVW SLDVHRMSFG GALTAVSVWL GDMHARFKRG DDLPNLATVV VVRGEMEKSS VTRGLPVPKA VYSFLRDNVS SSFHFPGWNK GRVVCQRSQL
601: KKLQLSVSDS STDASEATDL VPIMNAGFPQ PGTRIHTAEF NSDSESGTDD ESLSSEKEAE LLPI

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.