CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56998	Soybean	nucleus	94.41	94.52
VIT_17s0000g07500.t01	Wine grape	plastid	75.2	74.34
AT1G74850.1	Thale cress	plastid	70.31	70.07
PGSC0003DMT400063174	Potato	plastid	69.73	69.65
CDY45398	Canola	plastid	69.97	69.56
CDX73117	Canola	plastid	69.85	69.52
Bra015889.1-P	Field mustard	plastid	69.73	69.33
Solyc03g113630.2.1	Tomato	nucleus	69.27	69.19
GSMUA_Achr1P18290_001	Banana	cytosol	50.64	65.51
HORVU5Hr1G114630.1	Barley	mitochondrion	48.89	50.42
Os03t0824100-01	Rice	plastid	49.83	49.31
TraesCS5A01G486300.1	Wheat	plastid	49.59	49.02
TraesCS5D01G500300.1	Wheat	plastid	49.48	48.85
TraesCS5B01G500100.1	Wheat	plastid	49.24	48.12
OQU90703	Sorghum	plastid	49.36	47.27
Zm00001d022599_P002	Maize	plastid	48.89	46.98
KRH46714	Soybean	plastid	12.69	21.16
KRH66918	Soybean	cytosol	20.26	20.79
KRH57931	Soybean	cytosol	2.56	20.56
KRH12254	Soybean	plastid	19.79	20.51
KRG91073	Soybean	plastid	18.86	20.4
KRH01436	Soybean	plastid	20.72	20.34
KRH02451	Soybean	plastid	11.53	20.29
KRH02371	Soybean	plastid	11.53	20.29
KRH45156	Soybean	plastid	20.72	20.27
KRH60945	Soybean	plastid	15.95	20.09
KRH27571	Soybean	plastid	12.57	20.0
KRH37281	Soybean	plastid	19.09	19.76
KRH51622	Soybean	cytosol, plastid	15.95	19.68
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	14.32	19.68
KRH14115	Soybean	plastid	10.94	19.54
KRH37687	Soybean	plastid	10.48	18.56
KRG95241	Soybean	plastid	14.55	18.36
KRH59429	Soybean	plastid	10.36	17.69
KRH36131	Soybean	plastid	11.29	17.54
KRG90623	Soybean	nucleus	11.29	17.26
KRH43291	Soybean	plastid	10.36	16.92
KRH27783	Soybean	cytosol, plastid	9.2	15.13
KRH77730	Soybean	plastid	8.85	14.53

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100797731	MapMan:15.6.1.2.2.2	EMBL:ACUP02010345	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G094300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
UniProt:K7MKT2	EnsemblPlants:KRH03384	ProteinID:KRH03384	ProteinID:KRH03384.1	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat
SMART:SM00463	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233F372	SEG:seg

Description

hypothetical protein

Coordinates

chr17:+:7374357..7383061

Molecular Weight (calculated)

96154.2 Da

IEP (calculated)

5.518

GRAVY (calculated)

-0.200

Length

859 amino acids

Sequence
(BLAST)

001: MTITLSPSLS VPHPSPFSLT PTTTLRQLFF TNFTPSPRRR LQLQARAGKP NVLIPINPSV AVEKGKYSYD VETLINRITA LPPRGSIARC LDPFKNKLSL
101: NDFALVFKEF AQRGDWQRSL RLFKYMQRQI WCKPNEHIYT IMITLLGREG LLDKCREVFD EMPSNGVART VYVYTAVINA YGRNGQFHAS LELLNGMKQE
201: RVSPSILTYN TVINACARGG LDWEGLLGLF AEMRHEGIQP DVITYNTLLG ACAHRGLGDE AEMVFRTMNE SGIVPDINTY SYLVQTFGKL NRLEKVSELL
301: REMESGGNLP DITSYNVLLE AYAELGSIKE AMDVFRQMQA AGCVANAATY SVLLNLYGKH GRYDDVRDIF LEMKVSNTDP DAGTYNILIQ VFGEGGYFKE
401: VVTLFHDMVE ENVEPNMETY EGLIFACGKG GLYEDAKKIL LHMNEKGIVP SSKAYTGVIE AFGQAALYEE ALVVFNTMNE VGSNPTVETY NSFIHAFARG
501: GLYKEAEAIL SRMNESGLKR DVHSFNGVIK AFRQGGQYEE AVKSYVEMEK ANCEPNELTL EVVLSVYCSA GLVDESEEQF QEIKASGILP SVMCYCLMLA
601: LYAKNDRLND AYNLIDEMIT MRVSDIHQGI GQMIKGDFDD ESNWQIVEYV FDKLNSEGCG LGMRFYNALL EALWWMFQRE RAARVLNEAS KRGLFPELFR
701: KSKLVWSVDV HRMSEGGALT ALSVWLNNMH EMSRTGNDLP ELATVVVVRG HMEKSTEAQD FPIAKAAISF LQDNVPSSFT FPGWNKGRIV CQQSQLRRIL
801: SGTESSSSRK KMDKLVSLSN TPLTTAGVIT SKSDVQSGKA NDVDSRTDST RTELLTSAI

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.