CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51622	Soybean	cytosol, plastid	89.88	88.07
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	70.23	68.92
CDY31603	Canola	plastid	64.52	66.36
PGSC0003DMT400030453	Potato	mitochondrion	67.01	65.57
Solyc08g045850.2.1	Tomato	nucleus	67.16	65.52
AT5G42310.1	Thale cress	plastid	67.74	65.16
Bra017881.1-P	Field mustard	plastid	66.72	65.0
CDX71562	Canola	mitochondrion, plastid	66.28	64.66
GSMUA_Achr9P12090_001	Banana	mitochondrion	56.16	55.67
HORVU2Hr1G043170.1	Barley	mitochondrion	49.85	51.44
Zm00001d021716_P001	Maize	plastid	50.29	51.35
TraesCS2B01G238300.1	Wheat	plastid	50.29	51.27
EER99505	Sorghum	plastid	50.15	51.2
Os07t0548300-01	Rice	plastid	47.95	50.7
KRH27783	Soybean	cytosol, plastid	24.19	31.61
KRH77730	Soybean	plastid	24.05	31.36
KRH57931	Soybean	cytosol	4.55	28.97
KRH14115	Soybean	plastid	15.98	22.66
KRH02371	Soybean	plastid	14.66	20.49
KRH02451	Soybean	plastid	14.66	20.49
KRH12254	Soybean	plastid	24.49	20.14
KRH37281	Soybean	plastid	24.34	20.0
KRG91073	Soybean	plastid	22.87	19.65
KRH27571	Soybean	plastid	15.4	19.44
KRH37687	Soybean	plastid	13.64	19.18
KRH46714	Soybean	plastid	14.37	19.03
KRH36131	Soybean	plastid	15.25	18.81
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	17.16	18.72
KRH59429	Soybean	plastid	13.78	18.69
KRG90623	Soybean	nucleus	15.4	18.68
KRH43291	Soybean	plastid	13.93	18.06
KRH03384	Soybean	nucleus	20.09	15.95
KRH56998	Soybean	nucleus	19.5	15.5
KRH01436	Soybean	plastid	19.79	15.43
KRH45156	Soybean	plastid	19.35	15.03
KRH66918	Soybean	cytosol	17.89	14.58
KRG95241	Soybean	plastid	13.64	13.66

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100808427	MapMan:16.12.4.2	EMBL:ACUP02002143	EnsemblPlantsGene:GLYMA_04G018000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1JSV8	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH60945	ProteinID:KRH60945	ProteinID:KRH60945.1
PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF788	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023C0D0F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:1404439..1407200

Molecular Weight (calculated)

76611.6 Da

IEP (calculated)

6.976

GRAVY (calculated)

-0.230

Length

682 amino acids

Sequence
(BLAST)

001: MNLLPPQLTT TPFPSPSTHR HSHHNNIHFL PPPQSSASPI TAKPTILEEG PDDILSLHNR RYDFTPLLSF LSTTSNSSPP TSLDSTEFQL AESYRAVPAP
101: LWHAFLKSLC ASSSSSSSIA LAYAVVSWLQ KHNLCFSYEL LYSILINALG RSEKLYEAFL LSQRQVLTPL TYNALIGACA RNGDVEKALN LMSKMRRDGY
201: QPDFVNYSSI IQYLTRSNKI DSPILQKLYA EIETDKIEID GHLMNDIIVG FSKAGDPTRA MRFLAMAQSN GLNPKPSTLV AVILALGNSG RTHEAEALFE
301: EIRENGLEPR TRAYNALLKG YVRTGSLKDA EFVVSEMEKA GVKPDEQTYS LLIDVYAHAG RWESARIVLK EMEASNVQPN SYVFSRILAN YRDKGEWQKS
401: FQVLKDMKSS GVQPDRHFYN VMIDTFGKYN CLDHAMATFE RMLSEGIPPD IVTWNTLIDC HCKSGRHDMA EELFSEMQQR GYSPCITTYN IMINSMGEQQ
501: RWEQVTAFLS KMQSQGLQPN SITYTTLVDV YGKSGRFSDA IECLEVLKST GFKPTSTMYN ALINAYAQRG LSELAVNAFR LMTTEGLTPS LLALNSLINA
601: FGEDRRDAEA FAVLQYMKEN NIEPDVVTYT TLMKALIRVE KFQKVHKLAL SRSVCHLCFH DPSVLHFIKG NYHGLFLPAV HS

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.