CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g00400.t01	Wine grape	cytosol	67.15	65.25
PGSC0003DMT400008123	Potato	cytosol, plastid	60.08	62.96
Solyc08g045780.2.1	Tomato	cytosol	59.67	62.39
CDX78150	Canola	plastid	59.25	58.76
AT3G53170.2	Thale cress	plastid	60.29	58.12
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	59.67	57.52
CDX73576	Canola	plastid	58.84	56.71
KXG40345	Sorghum	plastid	55.93	55.35
Zm00001d027349_P001	Maize	plastid	54.68	54.23
OQU86802	Sorghum	cytosol	34.51	53.72
Os03t0115300-00	Rice	plastid	53.85	52.86
TraesCS4D01G353200.2	Wheat	cytosol	51.14	50.72
HORVU4Hr1G086600.3	Barley	plastid	51.98	50.4
TraesCS4B01G359900.1	Wheat	plastid	50.52	48.31
TraesCS5A01G528400.1	Wheat	plastid	52.81	47.39
GSMUA_Achr11P...	Banana	endoplasmic reticulum	55.93	39.68
KRH46714	Soybean	plastid	39.09	36.5
KRH02451	Soybean	plastid	35.14	34.63
KRH02371	Soybean	plastid	34.72	34.22
KRH37687	Soybean	plastid	32.43	32.16
KRH59429	Soybean	plastid	20.37	19.48
KRH43291	Soybean	plastid	20.79	19.01
KRH27783	Soybean	cytosol, plastid	17.46	16.09
KRH77730	Soybean	plastid	17.46	16.06
KRH60945	Soybean	plastid	22.66	15.98
KRH27571	Soybean	plastid	17.46	15.56
KRH51622	Soybean	cytosol, plastid	22.25	15.37
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	19.54	15.04
KRH36131	Soybean	plastid	17.26	15.01
KRG90623	Soybean	nucleus	17.46	14.95
KRG91073	Soybean	plastid	23.91	14.48
KRH57931	Soybean	cytosol	3.12	14.02
KRH12254	Soybean	plastid	22.25	12.91
KRH37281	Soybean	plastid	22.25	12.89
KRH03384	Soybean	nucleus	19.54	10.94
KRH56998	Soybean	nucleus	18.92	10.61
KRH45156	Soybean	plastid	18.5	10.14
KRH01436	Soybean	plastid	18.09	9.94
KRH66918	Soybean	cytosol	17.05	9.8
KRG95241	Soybean	plastid	11.43	8.08

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100810625	MapMan:35.1	EMBL:ACUP02008492	EnsemblPlantsGene:GLYMA_14G007500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7M485	EnsemblPlants:KRH14115	ProteinID:KRH14115	ProteinID:KRH14115.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233B560	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:+:595622..597840

Molecular Weight (calculated)

54272.9 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.202

Length

481 amino acids

Sequence
(BLAST)

001: MVLSVSGMML RWSSSISSAT PFTSSTNRSP PKTRRGFRVE SLKRSSKPAS AELVKDPNKD LSRILRTEAA IRGVHNKAKS SSHKQLWPKA LLESLDDAIK
101: RCRSHSALEI FALLRKQYWY QPRCRTYAKL LMMLGKCRQP EEASLLFEIM LSEGLKPTVD VYTALVSAYG QSGLLDQAFS TVEDMKSVVD CEPDVYTYSI
201: LIRCCAKFRR FDLIEHVLAE MSYLGIKCNC VTYNSIIDGY GKASMFEQMD DALNDMIENG NSHPDVFTLN SFVGAYGNAG QIDKMEKWYD EFQLMGIKPD
301: ITTFNTMIKS YGKAGMYEKM KTVMDFMEKR FFTPTIVTYN TVIEVFGKAG EIEKMDQHFL KMKHLGVKPN SITYCSLVSA YSKVGCIDKV DSIMRHVENS
401: DVVLDTPFFN CIISAYGQAG NLKKMGELFL AMRERKCEPD NITFACMIQS YNTQGMTEAV QNLENMMISA KSSLGTKLIG C

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.