Factsheet for Solyc08g045780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008123	Potato	cytosol, plastid	96.52	96.73
VIT_13s0064g00400.t01	Wine grape	cytosol	66.3	61.62
KRH14115	Soybean	plastid	62.39	59.67
CDX78150	Canola	plastid	56.96	54.02
AT3G53170.2	Thale cress	plastid	57.39	52.91
CDX73576	Canola	plastid	56.3	51.9
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	55.87	51.5
OQU86802	Sorghum	cytosol	33.91	50.49
KXG40345	Sorghum	plastid	53.04	50.21
Os03t0115300-00	Rice	plastid	52.83	49.59
Zm00001d027349_P001	Maize	plastid	51.74	49.07
TraesCS4D01G353200.2	Wheat	cytosol	49.78	47.22
HORVU4Hr1G086600.3	Barley	plastid	50.43	46.77
TraesCS4B01G359900.1	Wheat	plastid	49.78	45.53
TraesCS5A01G528400.1	Wheat	plastid	50.65	43.47
Solyc01g006500.2.1	Tomato	plastid	41.74	39.34
GSMUA_Achr11P...	Banana	endoplasmic reticulum	56.52	38.35
Solyc01g057200.2.1	Tomato	plastid	34.57	33.83
Solyc12g098990.1.1	Tomato	plastid	33.7	31.31
Solyc04g054270.2.1	Tomato	plastid	21.3	20.5
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	14.57	17.59
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	21.74	16.05
Solyc07g043600.2.1	Tomato	nucleus	20.0	15.86
Solyc08g045850.2.1	Tomato	nucleus	21.09	13.88
Solyc07g017760.1.1	Tomato	plastid	23.7	12.95
Solyc01g107320.2.1	Tomato	plastid	23.04	12.94
Solyc03g113630.2.1	Tomato	nucleus	20.65	11.05
Solyc06g009520.2.1	Tomato	nucleus, plastid	19.78	10.82
Solyc04g015950.1.1	Tomato	plastid	18.91	10.24

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4CKD3
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:Solyc08g045780.2	EnsemblPlants:Solyc08g045780.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276C64D	SEG:seg

Description

No Description!

Coordinates

chr8:-:16631521..16634800

Molecular Weight (calculated)

52413.9 Da

IEP (calculated)

6.927

GRAVY (calculated)

-0.078

Length

460 amino acids

Sequence
(BLAST)

001: MELHFAGASY LMKEGIKRRG LIIKSSSSST SQGLQKCSKK NLSRILRTEA AIRGIHRKAN SEKYTNLWPK AVLKALDDAI RDNRWDSALK IFDLLRKQHW
101: YEPRCHTYAK LLVMLGKCKQ PSQANLLFEI MLADGLQPTV DVYTALVNAY GLSGLLDEAL RTIDDMKSVS NCKPDVYTYS ILIKCCTKVR RFDMIEYILA
201: EMVYLGIECS SVTYNTIIDG YGKAKLFEQM ECSLTDMIEN ETAFPDVFTL NSVIGSYGSC GKLEEMEKWF EEFQVMGIKP DVMTFNILIK SYGRAGMYQK
301: MECVLDFMRN WFYSPTVVTY NIIIETLGKA CLIKNMEQFF LQMKHEGVKP SSFTYCSLVS AYSRAALMEN VDSIMRQVEN SDVVLDTPFF NCIISAYGQV
401: GDIERMVALF LEMKVRKCKP DYITFSTMIQ AYNSQGMTEA AMDLKTEMIT SCESNELISS

Best Arabidopsis Sequence Match ( AT3G53170.4 )
(BLAST)

001: MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL
101: FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST
201: VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR
301: FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI
401: QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS GENLDIL

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.