Factsheet for Solyc03g113630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063174	Potato	plastid	98.14	98.14
VIT_17s0000g07500.t01	Wine grape	plastid	75.12	74.34
KRH56998	Soybean	nucleus	69.3	69.46
KRH03384	Soybean	nucleus	69.19	69.27
AT1G74850.1	Thale cress	plastid	67.79	67.63
Bra015889.1-P	Field mustard	plastid	67.91	67.59
CDY45398	Canola	plastid	67.79	67.48
CDX73117	Canola	plastid	67.56	67.32
GSMUA_Achr1P18290_001	Banana	cytosol	49.53	64.16
HORVU5Hr1G114630.1	Barley	mitochondrion	47.79	49.34
Os03t0824100-01	Rice	plastid	49.07	48.62
TraesCS5A01G486300.1	Wheat	plastid	48.6	48.1
TraesCS5D01G500300.1	Wheat	plastid	48.6	48.05
TraesCS5B01G500100.1	Wheat	plastid	48.26	47.21
OQU90703	Sorghum	plastid	48.84	46.82
Zm00001d022599_P002	Maize	plastid	48.26	46.42
Solyc06g009520.2.1	Tomato	nucleus, plastid	21.51	22.0
Solyc01g107320.2.1	Tomato	plastid	20.35	21.37
Solyc08g045780.2.1	Tomato	cytosol	11.05	20.65
Solyc07g017760.1.1	Tomato	plastid	19.77	20.19
Solyc01g006500.2.1	Tomato	plastid	11.28	19.88
Solyc04g054270.2.1	Tomato	plastid	10.93	19.67
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	13.95	19.26
Solyc04g015950.1.1	Tomato	plastid	18.49	18.71
Solyc08g045850.2.1	Tomato	nucleus	14.88	18.31
Solyc12g098990.1.1	Tomato	plastid	10.35	17.98
Solyc07g043600.2.1	Tomato	nucleus	11.86	17.59
Solyc01g057200.2.1	Tomato	plastid	9.53	17.45
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	7.56	17.06

Protein Annotations

Gene3D:1.25.40.10	MapMan:15.6.1.2.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009295	GO:GO:0009451	GO:GO:0009507	GO:GO:0009508	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0042793	GO:GO:0045893	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4BKL5	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901
InterPro:Smr_dom	EnsemblPlantsGene:Solyc03g113630.2	EnsemblPlants:Solyc03g113630.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002767DF9
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:63706660..63711160

Molecular Weight (calculated)

97202.6 Da

IEP (calculated)

5.376

GRAVY (calculated)

-0.242

Length

860 amino acids

Sequence
(BLAST)

001: MSLSYNTFSQ VLTPVPPSHR YLFPAKIPNY YKLPGLHRRL LLTVAVRAKP KDLILGNPTV TVEKGKYSYD VETLINKLSS LPPRGSIARC LDTFKNKLSL
101: TDFSLVFKEF AARGDWQRSL RLFKYMQRQI WCKPNEHIYT LMIGILGREG LLDKAFEIFD EMSTHNVART VFSYTAIINS YGRNGQYETS LQLLEKMKQE
201: NIVPSILTYN TVINSCARGG YEWEGLLGLF AEMRHEGIQP DLVTYNTLLS ACSSRELEDE AEMVFRTMNE AGVLPDVTTY SYLVETFGKL GKLEKVSELL
301: MEMEAGGTSP EVTSYNVLLE AYAHLGSMKE AMDVFRQMQA AGCVANAETY SILLNLYGKN GRYDQVRELF LEMKTSNTEP DADTYNILIQ VFGEGGYFKE
401: VVTLFHDMVE EKVEPNMETY EGLIYACGKG GLHEDAKRIL LHMNGQGLVP SSKVYTAVIE AYGQAALYEE AVVAFNTMNE VGSRPVVETF NSLIHTFAKG
501: GLYKESEAIW FRMGEVGVPR NRDSFNGMIE GYRQGGQFEE AIKAYVEMEK ARCDPDERTL EAVLSVYCFA GLVDESEEQF QEIKSLGIQP SIICCCMMLA
601: IYAKSERWDM ARELLNDVMT NKTSDMHQII GRMIHGDFDD ENNWQMVEYV FDKLKSEGCG LSMRFYNTLI EALWWLGQKE RAARVLNEAT KRGLFPELFR
701: RNKLVWSVDV HRMWPGGACT AISIWLNDME ELFHKGEELP QLASIVVVRG QTEKSSVTRD LPVAKAAYSF LKDTISSSFS FPGWNKGRIV CQKTQLKRTF
801: SSAEPSVEAS KGDRLIPLSN SLISLLGTQT SMSVAKRSES VNADSERSTR PDPELMTSSV

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.