Factsheet for Solyc02g068760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum, plastid

Predictor Summary:

plastid 3
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 3
vacuole 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027006	Potato	cytosol, plastid	89.25	96.53
VIT_01s0011g01970.t01	Wine grape	cytosol	68.86	73.71
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	67.42	67.2
GSMUA_Achr7P03530_001	Banana	cytosol	61.32	64.86
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	59.87	60.85
Os02t0170000-02	Rice	cytosol	45.59	60.55
CDY31666	Canola	cytosol	59.39	59.39
CDX84260	Canola	cytosol, nucleus, plastid	60.19	58.32
OQU84443	Sorghum	cytosol	55.7	57.36
Zm00001d015377_P003	Maize	plastid	52.97	55.28
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	51.04	49.3
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	57.95	47.5
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	40.77	42.83
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	41.41	41.15
TraesCS6A01G163600.2	Wheat	nucleus	41.25	40.73
Solyc08g045780.2.1	Tomato	cytosol	16.05	21.74
Solyc04g054270.2.1	Tomato	plastid	15.41	20.08
Solyc12g098990.1.1	Tomato	plastid	15.73	19.8
Solyc01g057200.2.1	Tomato	plastid	14.93	19.79
Solyc01g006500.2.1	Tomato	plastid	14.93	19.06
Solyc07g043600.2.1	Tomato	nucleus	17.01	18.28
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	10.11	16.54
Solyc01g107320.2.1	Tomato	plastid	20.55	15.63
Solyc08g045850.2.1	Tomato	nucleus	16.69	14.88
Solyc07g017760.1.1	Tomato	plastid	19.58	14.49
Solyc03g113630.2.1	Tomato	nucleus	19.26	13.95
Solyc06g009520.2.1	Tomato	nucleus, plastid	17.98	13.32
Solyc04g015950.1.1	Tomato	plastid	15.41	11.29

Protein Annotations

MapMan:1.1.8.1.6.1	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4B7K8
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF421	InterPro:Pentatricopeptide_repeat	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc02g068760.2	EnsemblPlants:Solyc02g068760.2.1
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002767CE0	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:38680544..38684684

Molecular Weight (calculated)

70804.8 Da

IEP (calculated)

8.288

GRAVY (calculated)

-0.218

Length

623 amino acids

Sequence
(BLAST)

001: MRNFKMMCVL SACVSRIDIL LGTHLCLYTK KKRSEEHKVE VLALSSSLLV SKCPLNHILF EPRISRGGFR WKASASNEVP VEKWKQDSIF IDRRGRFRQF
101: DHKKVSRKRC GSLRGRGWKY GSGFVDGIFP VLSPIAQQIL TFIKTEKDPE RIWSSLDTLR PTNNTWDDLI NVAVQLRLNK QWDLIILMCE WILCRSSFQA
201: DVICYNLLIE AYGQSSLVKK AESTYLALVD ARCVPTEDTY ALLLKSYSKC RMIEKAEAVF SEMRKNGLPS SALVYNAYID GLMKGRNSQK ALAIFDRMKR
301: ESCQPSTDTY TMLINLYGKE NKSYMALKMF NEMKAQKCKP NICTYTALVN AFARSGLCEK AEEVFEELQE AGFEPDVYTY NALMEAYSRA GYPQGAAEIF
401: SLMQHMGCEP DTASYNIMVD AYGRAGLHED AQTVFDEMTR LGIAPTMKSY MLLISAYSRN SNVSKCEEIV NQMQKSGVKL DTFLLNSMLN LYGRLGQFAK
501: MEELLTVIEA GPYVADISTY NILINAYGRS GFIVKMEEVF QSLPSKNLQP DVVTWTSRLG AYSKKKQYQR CLEIFEEMID EGCYPDGGTA KVLLSSCSSE
601: DQIEQVTTVI RSMHKNVKTV ELV

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.