Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066525 | Potato | plastid | 97.31 | 96.84 |
| CDX71198 | Canola | cytosol | 51.4 | 74.38 |
| VIT_03s0091g00440.t01 | Wine grape | plastid | 71.67 | 72.38 |
| KRH27571 | Soybean | plastid | 46.4 | 70.37 |
| GSMUA_Achr6P16830_001 | Banana | cytosol | 47.99 | 69.93 |
| CDY32056 | Canola | plastid | 67.4 | 68.23 |
| Bra035290.1-P | Field mustard | plastid | 65.81 | 67.38 |
| AT5G02860.2 | Thale cress | plastid | 66.91 | 66.91 |
| KRG91073 | Soybean | plastid | 64.84 | 66.88 |
| TraesCS2A01G194800.1 | Wheat | endoplasmic reticulum, extracellular | 33.7 | 59.35 |
| HORVU2Hr1G035060.2 | Barley | cytosol | 42.98 | 56.32 |
| Os07t0590600-00 | Rice | plastid | 48.96 | 51.15 |
| KXG36606 | Sorghum | plastid | 48.23 | 51.1 |
| Zm00001d022003_P001 | Maize | plastid | 48.11 | 49.56 |
| TraesCS2D01G193100.1 | Wheat | plastid | 47.37 | 48.93 |
| TraesCS2B01G212000.1 | Wheat | plastid | 47.37 | 48.8 |
| Solyc07g017760.1.1 | Tomato | plastid | 35.9 | 34.92 |
| Solyc10g080330.1.1 | Tomato | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 10.87 | 23.36 |
| Solyc08g045780.2.1 | Tomato | cytosol | 12.94 | 23.04 |
| Solyc01g006500.2.1 | Tomato | plastid | 13.31 | 22.34 |
| Solyc01g057200.2.1 | Tomato | plastid | 12.58 | 21.91 |
| Solyc12g098990.1.1 | Tomato | plastid | 13.06 | 21.62 |
| Solyc08g045850.2.1 | Tomato | nucleus | 17.58 | 20.6 |
| Solyc02g068760.2.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 15.63 | 20.55 |
| Solyc04g054270.2.1 | Tomato | plastid | 11.97 | 20.5 |
| Solyc03g113630.2.1 | Tomato | nucleus | 21.37 | 20.35 |
| Solyc06g009520.2.1 | Tomato | nucleus, plastid | 20.88 | 20.33 |
| Solyc07g043600.2.1 | Tomato | nucleus | 13.8 | 19.48 |
| Solyc04g015950.1.1 | Tomato | plastid | 19.05 | 18.35 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.12.4.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:K4B2U9 |
| PFAM:PF12854 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF308 |
| InterPro:Pentatricopeptide_repeat | EnsemblPlantsGene:Solyc01g107320.2 | EnsemblPlants:Solyc01g107320.2.1 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002767C7E |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:94893041..94895692
Molecular Weight (calculated)
92485.6 Da
IEP (calculated)
8.285
GRAVY (calculated)
-0.223
Length
819 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKLGLPLL LPNPPPSKSI FQDFTVSSTP FLNDFFHNQN PSTSPNFPST STQSPQIPQS INFPSPIPRT RRRIIGKDND SNRGKPWNPH RLSPQGEKIL
101: QTLISPEFQS DSMHQILLSL YTVHRLESSE LDTESLSFDI LGIIKGLGYY KKIDLALNVF EWVRNRPDSG VLLNGSVIAV VISMLGKEGR VSVASSLLHN
201: LHKDGFGIDV YAYTSLITVF ARNGRYRDAV MVYKKMEEEG CQPTLITYNV ILNVYGKMGM PWSRISAVFE AMKNSGVVPD AYTYNTLITC CRRGSLHEEA
301: RQIFEEMKLG GFLPDKVTYN ALLDVYGRSR RPKEAMEVLR EMEVHGFSPS IVTYNSLVSA YARDGLMEEA MELKAKMIDK GIKPDVFTYT TLFSGFEKAG
401: KDESAMRIFE EMTSAGCKPN ICTFNALIKM YGNRGKFTEM MKVFDDIRTF GCSPDIVTWN TLLAVFGQNG MDSEVTGVFK EMKRAGFVAE RDTFNTLIGA
501: YSRCGAFDQA MVIYRRMLDA GVTPDLSTYN AVLAALARGG LWEQSEKVLA EMKDGRCKPN ELTYSSLLHA YANGKEIDRI HSLAEEIYSS VIQPHVVLLK
601: TLVLVYSKSD LLVETERAFF ELRSRGFSPD ITTLNAMLSI YGRKQMVTKA AEIMNFMNDA GFTPSLTTYN SLMYMYSRSS NYEKSEQLLM EIIAKGVRPD
701: VISYNTVIYA YCRNGRMRDA SRIFTEMKES GIVPDVITYN TFVSRYAADA MFIDAIEVVR YMIKQGCKPN DSTYNSIIDS YCKLNRRDEA LAFINNLRKL
801: NPHVSKEEET RLSARLMKK
101: QTLISPEFQS DSMHQILLSL YTVHRLESSE LDTESLSFDI LGIIKGLGYY KKIDLALNVF EWVRNRPDSG VLLNGSVIAV VISMLGKEGR VSVASSLLHN
201: LHKDGFGIDV YAYTSLITVF ARNGRYRDAV MVYKKMEEEG CQPTLITYNV ILNVYGKMGM PWSRISAVFE AMKNSGVVPD AYTYNTLITC CRRGSLHEEA
301: RQIFEEMKLG GFLPDKVTYN ALLDVYGRSR RPKEAMEVLR EMEVHGFSPS IVTYNSLVSA YARDGLMEEA MELKAKMIDK GIKPDVFTYT TLFSGFEKAG
401: KDESAMRIFE EMTSAGCKPN ICTFNALIKM YGNRGKFTEM MKVFDDIRTF GCSPDIVTWN TLLAVFGQNG MDSEVTGVFK EMKRAGFVAE RDTFNTLIGA
501: YSRCGAFDQA MVIYRRMLDA GVTPDLSTYN AVLAALARGG LWEQSEKVLA EMKDGRCKPN ELTYSSLLHA YANGKEIDRI HSLAEEIYSS VIQPHVVLLK
601: TLVLVYSKSD LLVETERAFF ELRSRGFSPD ITTLNAMLSI YGRKQMVTKA AEIMNFMNDA GFTPSLTTYN SLMYMYSRSS NYEKSEQLLM EIIAKGVRPD
701: VISYNTVIYA YCRNGRMRDA SRIFTEMKES GIVPDVITYN TFVSRYAADA MFIDAIEVVR YMIKQGCKPN DSTYNSIIDS YCKLNRRDEA LAFINNLRKL
801: NPHVSKEEET RLSARLMKK
001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.