Factsheet for GSMUA_Achr6P16830_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71198	Canola	cytosol	68.86	68.37
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	52.14	63.01
HORVU2Hr1G035060.2	Barley	cytosol	66.01	59.36
KRH27571	Soybean	plastid	56.76	59.07
VIT_03s0091g00440.t01	Wine grape	plastid	72.78	50.43
Bra035290.1-P	Field mustard	plastid	68.86	48.38
Solyc01g107320.2.1	Tomato	plastid	69.93	47.99
CDY32056	Canola	plastid	68.86	47.84
KXG36606	Sorghum	plastid	65.48	47.61
AT5G02860.2	Thale cress	plastid	69.22	47.5
PGSC0003DMT400066525	Potato	plastid	69.39	47.39
Os07t0590600-00	Rice	plastid	65.3	46.81
TraesCS2B01G212000.1	Wheat	plastid	66.01	46.67
TraesCS2D01G193100.1	Wheat	plastid	65.66	46.53
KRG91073	Soybean	plastid	64.77	45.84
Zm00001d022003_P001	Maize	plastid	64.59	45.66
GSMUA_Achr2P04910_001	Banana	plastid	42.17	28.45
GSMUA_Achr1P10690_001	Banana	cytosol	14.23	24.17
GSMUA_Achr1P15160_001	Banana	plastid	18.51	21.18
GSMUA_Achr1P18290_001	Banana	cytosol	23.84	20.18
GSMUA_Achr2P02090_001	Banana	cytosol	22.42	19.38
GSMUA_Achr9P12090_001	Banana	mitochondrion	23.67	19.33
GSMUA_Achr7P03530_001	Banana	cytosol	19.75	18.85
GSMUA_Achr11P...	Banana	plastid	17.26	17.86
GSMUA_Achr5P22880_001	Banana	plastid	14.41	15.88
GSMUA_Achr11P...	Banana	endoplasmic reticulum	18.33	15.19
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	20.28	13.6
GSMUA_Achr8P07220_001	Banana	cytosol	19.75	10.2

Protein Annotations

EnsemblPlants:GSMUA_Achr6P16830_001	EnsemblPlants:GSMUA_Achr6T16830_001	EnsemblPlantsGene:GSMUA_Achr6G16830_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF308	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	TIGRFAMs:TIGR00756	UniParc:UPI0002955061
UniProt:M0T7N1	MapMan:16.12.4.3	:	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At5g02860 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16830_001]

Coordinates

chr6:-:11230717..11232405

Molecular Weight (calculated)

63386.5 Da

IEP (calculated)

8.417

GRAVY (calculated)

-0.284

Length

562 amino acids

Sequence
(BLAST)

001: MPWNKVAALV DAMKSNGISP DRYTYNTLIS CCRRGSLYEE ATEIFREMKA MGFAPDNVTY NTLLDVYGKS RRHAEALGVL HDMEAAGFSP SIVTYNSLIS
101: SYAKDGILDE AMDLKEQMEV KGIKPDVFTY TTLISGFEKA GRDELAVRIY EEMESKRCKP NLCTFNALIK MHGNRGRFTE MMTIFEEIRS IGFKPDIVTW
201: NSLLAVFGQN GMDSEVSGVF KEMKKAGFVP ERDTYNTLIS AYSRCGSFDQ AMEVYKRMLA AGIGPDLSTY NAVLAALARG GLWQPAEKIL AEMKDGRCKP
301: NELTYCSLLH AYANGKELDR LHALSEDIYS RTIVPHNMLL KTLVLVNSKS DLLAETERAF MELRKRGCSP DITTLNAMVS VYGRRQMVAK VDEILKFMRA
401: RGFTPSLTTF NSLINMYSRL GDFERCEKIL NEIKLKGGRP DLYSYNTVIY AYGRKGRMKD ASRIFSGLQA SGLRPDIVTY NTFVASYVTN SMFVEAIDVV
501: RYMIKSGCRP NENTYNSIVD GYCKQGRKDE AIAFISNLQQ LDRGIPKDEQ ERLSERLAKS TL

Best Arabidopsis Sequence Match ( AT5G02860.3 )
(BLAST)

001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.