Factsheet for VIT_03s0091g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71198	Canola	cytosol	54.38	77.92
KRH27571	Soybean	plastid	49.94	75.0
GSMUA_Achr6P16830_001	Banana	cytosol	50.43	72.78
CDY32056	Canola	plastid	71.76	71.94
Solyc01g107320.2.1	Tomato	plastid	72.38	71.67
AT5G02860.2	Thale cress	plastid	72.01	71.31
Bra035290.1-P	Field mustard	plastid	70.04	71.0
PGSC0003DMT400066525	Potato	plastid	72.01	70.96
KRG91073	Soybean	plastid	67.57	69.02
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	35.76	62.37
HORVU2Hr1G035060.2	Barley	cytosol	45.75	59.36
KXG36606	Sorghum	plastid	51.66	54.2
Os07t0590600-00	Rice	plastid	51.05	52.81
Zm00001d022003_P001	Maize	plastid	51.17	52.2
TraesCS2D01G193100.1	Wheat	plastid	50.31	51.45
TraesCS2B01G212000.1	Wheat	plastid	50.06	51.07
VIT_11s0052g00600.t01	Wine grape	plastid	37.98	37.52
VIT_07s0005g06720.t01	Wine grape	cytosol	12.82	26.26
VIT_01s0011g01970.t01	Wine grape	cytosol	18.37	25.6
VIT_05s0020g00690.t01	Wine grape	plastid	13.93	22.69
VIT_07s0031g01360.t01	Wine grape	plastid	13.56	22.49
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	18.99	22.16
VIT_16s0039g02560.t01	Wine grape	cytosol	13.32	22.04
VIT_13s0064g00400.t01	Wine grape	cytosol	13.32	21.82
VIT_07s0005g01660.t01	Wine grape	plastid	22.93	21.45
VIT_17s0000g07500.t01	Wine grape	plastid	21.45	20.02
VIT_12s0028g01140.t01	Wine grape	cytosol	13.07	19.34
VIT_08s0007g08590.t01	Wine grape	cytosol	18.62	17.72

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100257649	wikigene:100257649	MapMan:16.12.4.3	ProteinID:CCB47718	ProteinID:CCB47718.1
UniProt:F6H676	EMBL:FN595242	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100257649
wikigene:LOC100257649	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF308	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CD838
ArrayExpress:VIT_03s0091g00440	EnsemblPlantsGene:VIT_03s0091g00440	EnsemblPlants:VIT_03s0091g00440.t01	unigene:Vvi.22337	RefSeq:XP_002269471	RefSeq:XP_002269471.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:6804406..6807382

Molecular Weight (calculated)

91157.6 Da

IEP (calculated)

8.403

GRAVY (calculated)

-0.245

Length

811 amino acids

Sequence
(BLAST)

001: MAEKLKLSLP VLLPGPPPSK PLFSDHHLST TPSPPPPITP LLQNFQPHTQ TPNPQSPIIP RRRRRIGKSQ DANRGKPWSH GRLSPPGQRI LQTLIDPTFN
101: LAQIDELLLE LFEQQPGESD FSVESLSLDV LGIVKGLGFY KKCDTALRVF EWVRNRKESE LLLNGSIIAV IISILGKGGR VSAAASLLHN LCKDGFDVDV
201: YAYTSMITAF TSNGRYREAV MVFKKMEEVG CKPTLITYNV ILNVYGKMGM PWNKMVGLVD RMKSAGIAPD SYTYNTLISC CRRGNLYEEA AGVLKEMKLA
301: GFSPDKVTYN ALLDVYGKSR RSKEAMEVLQ EMEGNGCPPS IVTYNSLISA YARDGLLEDA LELKNQMVEK GIKPDVFTYT TLLSGFEKAG KDKAAVQIFE
401: EMRNEGCKPN ICTFNALIKM HGNRGKFTEM MKVFEDIKTF QCSPDIVTWN TLLSVFGQNG MDSEVSGVFK EMKRAGFVPE RDTFNTLISS YSRCGSFDQA
501: MAVYKRMLEA GVNPDLSSYN AVLAALARGG LWKQSEKVLA EMKDGRCKPN ELTYCSLLHA YANGKEIERM CALAEEIYSG IIEPRAVLLK TLVLVNSKCD
601: LLMETERAFL ELRQRGFSPD ITTLNAMVSI YGRRQMVAKA NEILDCMKRG GFTPSLTTYN SLMYMYSRSA NFERSEEILR EILAKGIRPD IISYNTVIYA
701: YCRNGRMRDA SRVLSEMRES GPAPDIITYN TFIASYAADS MFVEAIDVVC YMIKHGCKPN QSTYNSIVDW YCKLNRRDEA SMFVNNLRKL DPHISMDEEC
801: RLSERMAKKW S

Best Arabidopsis Sequence Match ( AT5G02860.3 )
(BLAST)

001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.