Factsheet for Bra035290.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71198	Canola	cytosol	70.0	98.94
CDY32056	Canola	plastid	97.88	96.79
AT5G02860.2	Thale cress	plastid	89.62	87.55
VIT_03s0091g00440.t01	Wine grape	plastid	71.0	70.04
GSMUA_Achr6P16830_001	Banana	cytosol	48.38	68.86
KRH27571	Soybean	plastid	46.25	68.52
Solyc01g107320.2.1	Tomato	plastid	67.38	65.81
PGSC0003DMT400066525	Potato	plastid	67.0	65.13
KRG91073	Soybean	plastid	62.25	62.72
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	34.12	58.71
HORVU2Hr1G035060.2	Barley	cytosol	43.88	56.16
KXG36606	Sorghum	plastid	48.75	50.45
Os07t0590600-00	Rice	plastid	49.12	50.13
Zm00001d022003_P001	Maize	plastid	48.62	48.93
TraesCS2D01G193100.1	Wheat	plastid	48.0	48.42
TraesCS2B01G212000.1	Wheat	plastid	47.75	48.05
Bra024454.1-P	Field mustard	plastid	37.0	36.23
Bra018246.1-P	Field mustard	plastid	16.38	26.52
Bra017881.1-P	Field mustard	plastid	19.12	21.86
Bra020748.1-P	Field mustard	plastid	13.38	21.79
Bra035352.1-P	Field mustard	mitochondrion	13.0	21.58
Bra037464.1-P	Field mustard	plastid	14.12	21.12
Bra019526.1-P	Field mustard	cytosol	6.75	20.45
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	12.62	20.24
Bra015889.1-P	Field mustard	plastid	21.62	20.02
Bra004642.1-P	Field mustard	cytosol, plastid	19.38	18.95
Bra011847.1-P	Field mustard	plastid	11.12	18.31
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	15.75	16.58
Bra021733.1-P	Field mustard	cytosol	20.38	14.85
Bra018247.1-P	Field mustard	nucleus	4.25	11.22

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	EnsemblPlantsGene:Bra035290	EnsemblPlants:Bra035290.1	EnsemblPlants:Bra035290.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4F2J1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF308
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002546ECB
SEG:seg	:	:	:	:	:

Description

AT5G02860 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA08:-:9915797..9918285

Molecular Weight (calculated)

90184.0 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.253

Length

800 amino acids

Sequence
(BLAST)

001: MADKLALPLL LPSTPSPKPL FHDHHQLSRT PFLTSQTPPP SPVEPLLHDV FLHQNPNSRR PITPQPPKTH SPFLNRTHFR FRPIRHGQQI LRSLIEPTFD
101: SGQLGPLLSQ LSESSSSELL ALLKGLGFHK RFDLALSVFD WFMKQKDYQL DNSVVAVVIS MLGKEGRVSS AANLFNGLIE NGFSLDVYSY TSLISAFANS
201: GRYRDAVMVF KKMEEEGCKP TLITYNVVLN VFGKMGTPWS KITSLVEKMK SDGIAPDAYT YNTLITCCKR GSLHEEAARV FQEMKMAGFS HDKVTYNALL
301: DVYGKSHRPK EAMKVLNEME LSGFTPSIVT YNSLISAYAR DGMLDEAMEL KNQMVGKGMK PDVFTYTTLL SGFERAGKVE SAMSVFEEMR NAGCKPNICT
401: FNAFIKMYGN RGKFAEMMKI FDEINVCGLS PDIVTWNTLL AVFGQNGMDS EVSGVFKEMK RAGFVPERET FNTLISAYSR CGSFEQAMTV YRRMLEAGVT
501: PDLSTYNTVL AALARGGMWE QSEKVLAEME DGRCKPNELT YCSLLHAYAN GKEIGRMHFL AEEVYSGVIE PRAVLLKTLV LVCSKCDLLP EAERAFSELK
601: ERGFSPDITT LNSMVSIYGR RQMVAKANEV LDYMKEMGFT PSMATYNSLM YMHSRSADFG KSEEILREIQ AKGIKPDIIS YNTVIYAYCR NTRMRDASRI
701: FAEMRDSGIV PDVITYNTFI GSYAADSMFE EAIGVVRYMI KNGCRPNQNT YNSIVDGYCK LNRKDEAKLF AEDLKNLDPH APKDEEQRLL ERIVKKWPIR

Best Arabidopsis Sequence Match ( AT5G02860.3 )
(BLAST)

001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.