Factsheet for Bra024454.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29249	Canola	plastid	99.51	99.51
AT2G18940.1	Thale cress	plastid	88.0	87.47
VIT_11s0052g00600.t01	Wine grape	plastid	65.61	65.29
Solyc07g017760.1.1	Tomato	plastid	63.89	62.0
PGSC0003DMT400010473	Potato	plastid	63.77	61.88
KRH12254	Soybean	plastid	61.44	60.55
KRH37281	Soybean	plastid	60.95	60.0
GSMUA_Achr2P04910_001	Banana	plastid	57.04	55.94
KXG20531	Sorghum	plastid	50.8	53.48
Zm00001d036698_P001	Maize	plastid	51.16	53.18
Os05t0275000-01	Rice	cytosol, plastid	50.67	52.21
TraesCS7D01G482800.1	Wheat	plastid	50.8	50.98
TraesCS7A01G495500.1	Wheat	plastid	50.06	50.43
TraesCS7B01G401800.2	Wheat	plastid	50.06	50.18
HORVU7Hr1G111000.5	Barley	plastid	44.68	44.73
Bra035290.1-P	Field mustard	plastid	36.23	37.0
Bra018246.1-P	Field mustard	plastid	13.59	22.47
Bra017881.1-P	Field mustard	plastid	19.22	22.43
Bra037464.1-P	Field mustard	plastid	13.46	20.56
Bra035352.1-P	Field mustard	mitochondrion	12.12	20.54
Bra011847.1-P	Field mustard	plastid	12.12	20.37
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	12.24	20.04
Bra020748.1-P	Field mustard	plastid	12.0	19.96
Bra015889.1-P	Field mustard	plastid	20.32	19.21
Bra004642.1-P	Field mustard	cytosol, plastid	18.48	18.46
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	15.42	16.58
Bra019526.1-P	Field mustard	cytosol	5.26	16.29
Bra021733.1-P	Field mustard	cytosol	18.85	14.03
Bra018247.1-P	Field mustard	nucleus	4.04	10.89

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	EnsemblPlantsGene:Bra024454	EnsemblPlants:Bra024454.1	EnsemblPlants:Bra024454.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M4E6Q0	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000253EF21	SEG:seg	:	:

Description

AT2G18940 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA06:+:15883293..15885746

Molecular Weight (calculated)

91609.1 Da

IEP (calculated)

8.535

GRAVY (calculated)

-0.190

Length

817 amino acids

Sequence
(BLAST)

001: MDAALSPLKP PYPIQSKRPP PPQSSNHSLK FSSATLHLPP PSPSPSFPLD SLLHHLVHLS SSPRHATSPP AARFPSLEVK SAKPFSSPVL GINGSLKLLC
101: KKETVLLNSI LAHPLSELSS FFDSAKSELI RTDVFSLVKA LDDSGNWERA VLLFEWLVSA SNSGDLKLDH YVIEIVVRIL GRESQYSVAA KLLDKIPLQE
201: YTLDVRAYTT ILYAYSRTGK YERAINLFER MKEMGPSPTL VTYNVILDVF GRMGRSWGKI VLVLDEIRSK GMKFDEFTCS TVLSACAREG LLREAKEFFA
301: EIKSSGYEPG TVTYNALLQV YGKAGVYTEA LKILKEMEEN NCPADSVTYN ELVAAYVRAG FTKEAAGVIE MMTGKGVMPN AITYTTVIDA YGKSGKEEEA
401: LKLFYSMKRA GCVPNTCTYN VVLSMLGKKS RSNEMVKMLC DMKSSGCSPN RVTWNTMLAL CGNKGMDKYV NRVFREMKSC GFEPDRDTFN TLISAYGRCG
501: SEVDASKMFG EMTRAGFNAC VTTYNALLNA LARQGDWRSG EGVISDMKSK GFKPTETSYS LMLQCYAKGG NVLGIERIEK EIVEGQIFPS WMLLRTLLLA
601: NFKCRALAGM ERAFALFKKH GYKPDMVIFN SMLSIFTRNN MYDQAHEILQ SIRDHELTPD LVTYNSLMDM YVRRGECWKA EEILKSLEKS KLRPDLVSYN
701: TVIKGFCRKG LMQEAVRMLS EMTERGIRPC IFTYNTFVSG YTAMGMFGEI EDVIECMGKN KCRPNELTYK MVVDGYCRGG RYSEAMEFVS KIKTLDAYFD
801: DQSIQRLAVR VRENLES

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.