Factsheet for Bra035352.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74617	Canola	mitochondrion	72.61	99.72
AT5G36300.2	Thale cress	cytosol	52.49	76.67
GSMUA_Achr1P10690_001	Banana	cytosol	38.8	56.5
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	44.19	55.91
VIT_16s0039g02560.t01	Wine grape	cytosol	53.73	52.86
KRH27783	Soybean	cytosol, plastid	51.66	47.7
KRH77730	Soybean	plastid	51.45	47.42
Os06t0710800-01	Rice	cytosol	47.3	46.34
OQU77078	Sorghum	mitochondrion	46.27	45.14
PGSC0003DMT400060882	Potato	mitochondrion	50.83	45.04
TraesCS7A01G407400.1	Wheat	cytosol	41.08	43.33
HORVU0Hr1G007320.4	Barley	cytosol	41.08	42.95
TraesCS7D01G400900.3	Wheat	cytosol	45.85	42.58
TraesCS7B01G307500.2	Wheat	cytosol	45.02	41.81
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	44.19	41.76
Zm00001d014751_P003	Maize	plastid	40.25	36.47
Bra017881.1-P	Field mustard	plastid	33.82	23.29
Bra011847.1-P	Field mustard	plastid	17.84	17.7
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	15.35	14.83
Bra037464.1-P	Field mustard	plastid	16.39	14.77
Bra020748.1-P	Field mustard	plastid	13.69	13.44
Bra035290.1-P	Field mustard	plastid	21.58	13.0
Bra024454.1-P	Field mustard	plastid	20.54	12.12
Bra004642.1-P	Field mustard	cytosol, plastid	18.67	11.0
Bra015889.1-P	Field mustard	plastid	19.09	10.65
Bra019526.1-P	Field mustard	cytosol	5.6	10.23
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	15.77	10.0
Bra018246.1-P	Field mustard	plastid	9.13	8.91
Bra021733.1-P	Field mustard	cytosol	15.15	6.65
Bra018247.1-P	Field mustard	nucleus	3.94	6.27

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra035352	EnsemblPlants:Bra035352.1	EnsemblPlants:Bra035352.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4F2Q3	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF483
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000253E60D
SEG:seg	:	:	:	:	:

Description

AT5G42310 (E=7e-075) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrScaffold000104:-:63648..65361

Molecular Weight (calculated)

54914.8 Da

IEP (calculated)

8.951

GRAVY (calculated)

-0.291

Length

482 amino acids

Sequence
(BLAST)

001: MMMSLRTYGS PLPTRYSRRR PVNGCSNHPV SRQIVTEELP ISTYNRRIRY RCRTGGIDEA MSLLAKLDSL GSQPDPLSYV TLIETLSALG RTLEADALFQ
101: EVIRSGLHGS YPLRFHNALL GGYLRKGQLA LALRVLDHMQ LENVEKNQET CEVLLNYYVS AGRLEESWRV VNEMKKRKFP LTSFVYGKII RIYRDNGMWK
201: KALGIIEEIC EIGLPMDVEL YNSIIDTFGK YGELDEALQV LRKMQSSHDF KPNISTWNSL IRWHCHHGAV DKALELFTMM QDQGLYPDPR MFVKLIARLG
301: EKGSWNMISK SFESIKCKED RRDTRAIYAA LVEIVGQFGS FQDPEELVGR LKSEGVAPSA NIFCTLADAY AQQGLCKQTV KVLKMMEKEG TEPNLIMLNV
401: LINAFGNAGK HMEALSIYHH IKESGFTPDV VTYSTLMKAF TRAKKYEKVP EIFREMEASG CSADRKARQL LQNALMVLDK RH

Best Arabidopsis Sequence Match ( AT5G36300.2 )
(BLAST)

001: MAPISHTRIS LSMYNSWIRY FCRTGETNEA MSLLAEIHSL GSRPDPLSYV SFIETLASLR RTLEADALFH EVVRFMIYGS YSVRLYNALV SRYLRKEVSW
101: RVVNEMKKRK FRLNSFVYGK IIRIYRDNGM WKKALGIVEE IREIGLPMDV EIYNSVIDTF GKYGELDEEL QVLEKLQRSS DSRPNIRTWN SLIRWHCHHG
201: AVDMALELFT MIFEDIGELV GKLKSQGVAP SANLFCTLAN AYAQQGLCKQ TVKVLKMMEN EGIEPNLIML NVLINAFGTA GKHMEALSIY HHIKETVWIH
301: PDVVTYSTLM KAFTRAKKYE MVCSFYLVTL

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At5g36300 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.