Factsheet for Bra006974.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
plastid 2
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78150	Canola	plastid	90.38	92.99
CDX73576	Canola	plastid	90.18	90.18
AT3G53170.2	Thale cress	plastid	80.36	80.36
VIT_13s0064g00400.t01	Wine grape	cytosol	60.12	60.61
KRH14115	Soybean	plastid	57.52	59.67
PGSC0003DMT400008123	Potato	cytosol, plastid	52.3	56.86
Solyc08g045780.2.1	Tomato	cytosol	51.5	55.87
KXG40345	Sorghum	plastid	50.1	51.44
Zm00001d027349_P001	Maize	plastid	49.5	50.93
Os03t0115300-00	Rice	plastid	49.9	50.82
TraesCS4D01G353200.2	Wheat	cytosol	48.3	49.69
HORVU4Hr1G086600.3	Barley	plastid	48.9	49.19
OQU86802	Sorghum	cytosol	30.46	49.19
TraesCS4B01G359900.1	Wheat	plastid	47.7	47.32
TraesCS5A01G528400.1	Wheat	plastid	48.3	44.96
GSMUA_Achr11P...	Banana	endoplasmic reticulum	51.1	37.61
Bra037464.1-P	Field mustard	plastid	39.68	37.01
Bra020748.1-P	Field mustard	plastid	33.07	33.6
Bra011847.1-P	Field mustard	plastid	20.64	21.19
Bra019526.1-P	Field mustard	cytosol	11.02	20.83
Bra035352.1-P	Field mustard	mitochondrion	14.83	15.35
Bra017881.1-P	Field mustard	plastid	21.44	15.29
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	20.04	13.16
Bra035290.1-P	Field mustard	plastid	20.24	12.62
Bra024454.1-P	Field mustard	plastid	20.04	12.24
Bra015889.1-P	Field mustard	plastid	19.04	11.0
Bra018246.1-P	Field mustard	plastid	10.22	10.32
Bra004642.1-P	Field mustard	cytosol, plastid	16.43	10.02
Bra021733.1-P	Field mustard	cytosol	19.04	8.65
Bra018247.1-P	Field mustard	nucleus	4.41	7.26

Protein Annotations

EnsemblPlants:Bra006974.1	EnsemblPlants:Bra006974.1-P	EnsemblPlantsGene:Bra006974	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF425	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0002542EBD	UniProt:M4CRY2	MapMan:35.1	:	:	:

Description

AT3G53170 (E=3e-224) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glutamine biosynthetic process; LOCATED IN: nucleolus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G48730.1); Has 17188 Blast hits to 5538 proteins in 167 species: Archae - 1; Bacteria - 16; Metazoa - 307; Fungi - 211; Plants - 16025; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).

Coordinates

chrA09:-:26598455..26600279

Molecular Weight (calculated)

56477.8 Da

IEP (calculated)

8.791

GRAVY (calculated)

-0.152

Length

499 amino acids

Sequence
(BLAST)

001: MKQEQLCLLV AKVSSTQELW SLLVSQSFDG IYTTTCSRRV ASVSVVPTTC STKSPKERKD KKSSGLISTK HQVDPKRELS RILRTDAAVK SIERKANSEK
101: YNTLWPKAVL EALDDAVKEN RWQSALKIFS LLRKQHWYEP RCKTYTKLFK LLGNCKQPEQ ASLLFELMLS EGLKPTIDVY TSLISVYGKC SLLEKAFATL
201: EYMKSVSDCT PDVFTFTVLI SCCCKLARFD LVNRVLLEMS YLGVRCSTVT YNTILDGYGK AGMFEEMENV LADMIEDGDS LPDVYTFNSI IGSYGNGGNI
301: RKMESWYNRF QLMGVEPDIT TFNVLILSFG KAGMYKKMSS VMDYMEKRFF SPTVVTYNIV IETFGKAGRI EKMEEVFRKM KYRGVKPNSI TYCSLVDAYS
401: KAGLVGKIDS VLRQVVNSDV VLDTVFFNCI INAYGEAGDL ATMKELYIQM EERKCKPDKI TFATMVKTYA AHGIFDAVRE LEKQMISTCE SSGKKRLMG

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.