CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027349_P001	Maize	plastid	93.21	93.4
OQU86802	Sorghum	cytosol	55.56	87.38
Os03t0115300-00	Rice	plastid	77.57	76.94
TraesCS4D01G353200.2	Wheat	cytosol	74.9	75.05
HORVU4Hr1G086600.3	Barley	plastid	75.93	74.4
TraesCS4B01G359900.1	Wheat	plastid	73.66	71.17
TraesCS5A01G528400.1	Wheat	plastid	75.93	68.84
VIT_13s0064g00400.t01	Wine grape	cytosol	57.61	56.57
KRH14115	Soybean	plastid	55.35	55.93
PGSC0003DMT400008123	Potato	cytosol, plastid	50.62	53.59
Solyc08g045780.2.1	Tomato	cytosol	50.21	53.04
CDX78150	Canola	plastid	50.62	50.72
AT3G53170.2	Thale cress	plastid	51.85	50.5
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	51.44	50.1
CDX73576	Canola	plastid	51.03	49.7
GSMUA_Achr11P...	Banana	endoplasmic reticulum	63.79	45.72
EER87934	Sorghum	plastid	39.3	38.82
EER97871	Sorghum	plastid	34.98	30.36
KXG30749	Sorghum	plastid	20.16	19.68
OQU77078	Sorghum	mitochondrion	17.08	16.8
EES13486	Sorghum	plastid	18.93	15.28
OQU84443	Sorghum	cytosol	18.72	15.04
KXG36606	Sorghum	plastid	23.66	14.88
KXG20531	Sorghum	plastid	23.05	14.43
EER99505	Sorghum	plastid	19.75	14.37
EES16159	Sorghum	plastid	19.75	11.01
KXG36530	Sorghum	plastid	18.31	10.87
OQU90703	Sorghum	plastid	19.34	10.48

Protein Annotations

EnsemblPlants:KXG40345	EnsemblPlantsGene:SORBI_3001G532900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:KXG40345	ProteinID:KXG40345.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI00081AE6AA	UniProt:A0A1B6QR16	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr1:+:79628056..79630455

Molecular Weight (calculated)

53971.4 Da

IEP (calculated)

8.616

GRAVY (calculated)

-0.260

Length

486 amino acids

Sequence
(BLAST)

001: MMNLQTPLPP TSSPAPAPRA SRAPVVPAAR RGTGRRRQRR KPSSSPSTRV GEAEHEQPDA LARILRTEAA VSGVSRKAAA ARQQSTNLWP RAVLEALDSA
101: VAACRWESAL EIFELLRKQH WYEPRSQTYA RLLMMLGKCR QPGPAAALFK AMLSERLRPT ADVYTALVGA YGYSGLLDEA LAAVEQMKGA ADCKPDGYTF
201: SVLINCCAKS RRFDLIPAVL DEMSYLGIEC NSVIHNAIID GYGKAAMFEE MEGALSAMLE SGSNVPDIYT MNSVIGAYGN HGRTDEMEKS YSEFQLMGVE
301: PDTKTFNIMI KSYGKAGMYD KMMSIFRYMK KRFFSPTAVT FNTVIECFGR AGNIEKMEYY FRLMKIQGVK PNPITYCSLV NGYSKAGLLD KVPGIIRQTE
401: NTNVVLDTPF FNCVISAYAK SGDIKIMEEM LQLMKEKKCK PDKITYATMI QAYTAQGMDE AARLLEMEAE RFDKRLLGPV SEVDGE

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.